Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0754 ATGGCTAACATGGTCTTTGTTGGTGTTAAGGTAGCTGCTGTTTCTCTACCACCATTACCCATTACAAACAATGCTCTAAGTTTCAGTTTCACCCAGAAGAGACACTTCCTTCTTCTGAATTGCTCCCGAACCAATAACAGAACAACGTCTTTCTCTTCTTCCTTCTCAATCTCGTCATCACCTCTCACAAACAAGGGTGGTTGTTCTGTGTTGGCGTGTCTCCCTCCTGCTTCGTCTGAATCCTCAACCTCATCATCTTCCACTGCTAAACCCTCTTCCACTTTCCCTTCAACTAAGCTTTATGTCAGTGGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGGTACGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTTTTGGATGGTAGGGTCATATTTGTTGAAGTTGCCAAACCGAGATCAGAGCTACCGCCGCGAAACAGGGAAGGCACAAGATTGTAA 573 0.4363 MANMVFVGVKVAAVSLPPLPITNNALSFSFTQKRHFLLLNCSRTNNRTTSFSSSFSISSSPLTNKGGCSVLACLPPASSESSTSSSSTAKPSSTFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPPRNREGTRL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0754 190 SMART rrm1_1 99 172 IPR000504 GO:0003723
Vra1g0754 190 PANTHER TRANSFORMER-2-RELATED 10 180 - -
Vra1g0754 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Vra1g0754 190 SUPERFAMILY RNA-binding domain, RBD 89 185 IPR035979 GO:0003676
Vra1g0754 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Vra1g0754 190 PANTHER RNA-BINDING PROTEIN 1 10 180 - -
Vra1g0754 190 Gene3D - 73 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0754 Vra-Chr1 8894914 8897373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0754 72 182 Eukaryotic Initiation Factors Gene Family AT5G06000 26.126 6.89e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0754 - - gmx:100305561 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0754 1 8894914 8897373 Vra1g0754 1 8894914 8897373 ECH