Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0753 ATGGAGATGCAGGACCAAATAGAAAACACAAGATCAACCATATCAGGCTCAGCTAGTAACTACCATTCAAATGCTGGAAAACAATCTGAAAATGTTGCTCATATACCTTCTGTCGGAAACGGCCATGCTCCCAAGGCGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTTCTTGAAGCTTTGAAATTGTATGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTCTCTAAGGTTGTTAGGGAATCTGAGGGAAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCACCCATATCCTCGAAAATCAGTTGATGCTTTCAGAGGACATGCCATGCCAAATGAAACTGAAACATCTCAATCCACAAACCTGTTGGTTGCGGAGAAAGACACCCCATCTCCGACCTCTGTGCTATCTACGGTTGGTTCGGAAGCGTTCGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCGCCAAACTCTTGCACAACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAAAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCTGACCCAAACATGTGCATGAAGCCGGAATTTAGTTCCAAGGAAACTGAATATGTTATAGATGATTCGGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGTAGACAATCAGAAGCCGCAGAACATAGATGACAATGTTAAGGCAATAACTGTTAAGTCTGATGAAGTGGATGATGTTGGGAATGAGAAGCCTGGCCAATCAACCGAGCAAGTAGATACACAATTATCACTAGGCTTGGTTGGTGGCAACTGGTCCATAACCATAACACCTGATTCTGACGGAGCTGATCGCAGCGAAGAGCCACCGAAGGAGAACGTGTGCCTCGGTGAATGTGTACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTCCCAGCTTTCTGTGTCAGCCCATGCAATAAGATCCTAAATCCCATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGTACTGGTTCCAACACAGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTGAAAAATATGAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAGAGGGTTTGTTCCATATAAAAGATGTTTGGCCGAAAGAGATGGAAATTCTTTAATCGCGACCTTGGAAGAGAGGGACGGGCAACGAGCTCGTGTGTGCTCATAG 1434 0.4463 MEMQDQIENTRSTISGSASNYHSNAGKQSENVAHIPSVGNGHAPKARKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVDAFRGHAMPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSDPNMCMKPEFSSKETEYVIDDSANMPQTTSIKLFGRTVSMVDNQKPQNIDDNVKAITVKSDEVDDVGNEKPGQSTEQVDTQLSLGLVGGNWSITITPDSDGADRSEEPPKENVCLGECVPDASFPQWSLYQGLPAFCVSPCNKILNPMPLRPSLKVRAREEESCCTGSNTESVCDMENQGKNSDAVDSKCEKYEGEGAAPQKPARGFVPYKRCLAERDGNSLIATLEERDGQRARVCS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0753 477 MobiDBLite consensus disorder prediction 1 35 - -
Vra1g0753 477 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Vra1g0753 477 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Vra1g0753 477 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Vra1g0753 477 MobiDBLite consensus disorder prediction 210 236 - -
Vra1g0753 477 MobiDBLite consensus disorder prediction 107 138 - -
Vra1g0753 477 MobiDBLite consensus disorder prediction 1 50 - -
Vra1g0753 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vra1g0753 477 PANTHER PROTEIN REVEILLE 7-RELATED 3 464 - -
Vra1g0753 477 Gene3D - 58 105 - -
Vra1g0753 477 PANTHER SWI/SNF COMPLEX-RELATED 3 464 - -
Vra1g0753 477 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Vra1g0753 477 SMART sant 55 103 IPR001005 -
Vra1g0753 477 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vra1g0753 477 CDD SANT 58 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0753 Vra-Chr1 8889963 8894536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra1g0753 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0753 - - vun:114181885 879.011