Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0749 ATGGCTAATTTTGAAAAAACTGGGGAGCCTAGTCCATCCGAAACATATGCAAAACATAATGAACATTCTAAGTCTGGGAAGGTTGTATCAAGGACACGAAGTGCATCAGTTTCTATTCCTGTAATCTCCATGGAGTCATATGAGAGAGAAATTAGTCTTGTGGGTCATACTGGTCGACTTCCTAGTGTAAGAAAACCATCCTTAATGCATATGAGTGGGCCACTATATGTTACCAACGGAACGGAAAATCCTTTGAAACACACTATAGTTGTGGAAGGAAACAAAGTAGTAGAGAGCAAGACAGAAAAATTTTGTAATCTTAGTGAGAAAGATGAAAATCAATGCAATAACAACTATGATAGAAAGAATGAACACTTGATGAGGTCTGGGCTACTCGGAACATGTAATGATCCTTATTGTACTACTTGCCCAACTTACTTCAAGACCTCTATGCAAAGACTTTCAAATGATTCCACTGTGTTTGATCCCCAGTTTCACTTCCACAGTGCTCTTTATGGGGATGCCAAGGGTTTTGGTAGAAAAATTCTCTCTTTCTGTTCTTCATGTGTTCCTGGAGTTATGAATCCTCACTCAAAAGTTGTACAACAATGGAACAAGCTTTTGGCCATTTTTTGCATGGGAGCAATTTTTGTGGATCCGTTATTTTTGTTTTTAATCTATGTACAGAAGGATGATAAATGTATAGCTATCGACTGGGATACGAGAAAAATACTTGTTTTTCTTAGAACAGTGAATGATACTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGCTGGCCTATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTGCACTTCATTACCTGAAGGGTTATTTTCTTTTTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATAATGATGTTTTTTGTCCTACCAACCCGCTTGGGGGCATCAGGGGCAAACTATGCAAAGAATCTTCTGCGTGCAGCGATCCTTGTGCAGTATATTCCCAGATTATTCAGGATCCTGCCTCTGCTAATTGGACAATCTGAAACAGGATTTATATTTGAGTCAGCTTGGGCAAATTTCATCATAAATCTTCTCATTTTCATGCTTGCTAGCCATATTGTTGGCTCTTGCTGGTATCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAGATGCCTGCGGAAAGTCTCGTATTGATAGATGCACAACAATCATTGATTGTGGAAGACGAGGTTATATCAGAAACAACTATTCTGACCAAGCATCAGCTCTATGGAACAATAACACAGATGCCATTGCTTGTTTGAATTCCTCACCCGGCGGTTTCCAATATGGGATCTATGTCAATGTTGTACCTCTTACCACGGAAACTAGTTTGACTAACAAATATATTTATTCTCTTTTTTGGGGGTTCCAGCAAATTAGTACTCTCGCTGGTAGTTTAACCCCAAGCAGGTTTTGGGGAGAAGTCCTTTTTACAATGGCCATTATAGGATTGGGACTCTTGCTTTTTGCAGTTCTCATTGGAAACATACATAACTTTCTTCAAGGTCTTGGAAGAAGAAGGCTAGAAATGCAACTAAGAGGCCGCGATGTTGAGCAATGGATGAGGCATCGTCGTTTACCAGAAGATCTAAGAAAGAAAGTACGAAGCGCTGAACGGTATAATTGGGCTGCAACAAAAGGGGTTAATGAAGAAATGATTCTTGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTCCGAATTTTCACTCTGATGGATGAACCTATCTTGGATGCCGTCTGTGAGAGACTGAGACAGAAGACATACATAAAAGGAAGTTTAATTTTGACCCAAGGTTGTCTAGTTGAGAAGATGATCTTTATTGTGCGCGGAAAATTGGAGAGCATTGGAGAAGATGGAGTTGGAGTTCCCTTGTCTGAAGGAGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGCTTCCAGGGCAGAGGTGGCTTAGCAACAGGACAGTAAAGTGCCTAACAAATGTGGAGGCATTTTCAATCCGAGCTGAAGATCTTGAAGAAGTCACAAGCCGGTTCATGAGATTCTTGCGGAATCTTCGGGTTCAAGGATCTCTAAGGTATGAATCACCTTACTGGCGATCCTTGGCAGCAACTCGAATTCAGGTGGCATGGAGATACTGGAAGAAACGTAGAAGTAATTCTATGACCTCACAATTATATCAACAGATGAATTTGTAA 2331 0.4015 MANFEKTGEPSPSETYAKHNEHSKSGKVVSRTRSASVSIPVISMESYEREISLVGHTGRLPSVRKPSLMHMSGPLYVTNGTENPLKHTIVVEGNKVVESKTEKFCNLSEKDENQCNNNYDRKNEHLMRSGLLGTCNDPYCTTCPTYFKTSMQRLSNDSTVFDPQFHFHSALYGDAKGFGRKILSFCSSCVPGVMNPHSKVVQQWNKLLAIFCMGAIFVDPLFLFLIYVQKDDKCIAIDWDTRKILVFLRTVNDTVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALHYLKGYFLFDLFVVFPLPQIMMFFVLPTRLGASGANYAKNLLRAAILVQYIPRLFRILPLLIGQSETGFIFESAWANFIINLLIFMLASHIVGSCWYLFGLQRVNQCLRDACGKSRIDRCTTIIDCGRRGYIRNNYSDQASALWNNNTDAIACLNSSPGGFQYGIYVNVVPLTTETSLTNKYIYSLFWGFQQISTLAGSLTPSRFWGEVLFTMAIIGLGLLLFAVLIGNIHNFLQGLGRRRLEMQLRGRDVEQWMRHRRLPEDLRKKVRSAERYNWAATKGVNEEMILENLPEDLQRDIRRHLFKFVKKVRIFTLMDEPILDAVCERLRQKTYIKGSLILTQGCLVEKMIFIVRGKLESIGEDGVGVPLSEGDACGEELLTWYLEHSSSVSTDGKKVRLPGQRWLSNRTVKCLTNVEAFSIRAEDLEEVTSRFMRFLRNLRVQGSLRYESPYWRSLAATRIQVAWRYWKKRRSNSMTSQLYQQMNL* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0749 776 MobiDBLite consensus disorder prediction 1 35 - -
Vra1g0749 776 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 764 - -
Vra1g0749 776 Gene3D Helix hairpin bin 529 594 - -
Vra1g0749 776 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 4 764 - -
Vra1g0749 776 SUPERFAMILY Voltage-gated potassium channels 196 530 - -
Vra1g0749 776 Pfam Ion transport protein 206 527 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra1g0749 776 SMART cnmp_10 602 735 IPR000595 -
Vra1g0749 776 Gene3D Jelly Rolls 600 725 IPR014710 -
Vra1g0749 776 ProSiteProfiles cAMP/cGMP binding motif profile. 602 680 IPR000595 -
Vra1g0749 776 CDD CAP_ED 602 730 IPR000595 -
Vra1g0749 776 Gene3D - 202 526 - -
Vra1g0749 776 SUPERFAMILY cAMP-binding domain-like 530 730 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0749 Vra-Chr1 8812391 8822036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0749 12 678 Ion Channels AT3G17700 58.209 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0749 K05391 - gmx:112997782 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0749 1 8812391 8822036 Vra1g0749 1 8812391 8822036 ECH