Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0748 ATGGCTCGTTTTGAAAAAGATGAGGTTCCTATGCTGTCTGAAACGCGTGCTCAACTATCTGATGAATTCGTGGATTCTAATTTCCGGAGGCTAGTATCTAGAACACGAAGTGCTTCAATTTCGATTCCCATGGCTTCCTTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACCGGTCCCCTTCGTAGTGTGAGAAAAACCCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTACGCATGGAACTTCAAATCTTTCAGGACAGAATATAGCTGCTACAGGAAACAAAGTAGTGGAAAGTAAGACAGAAAACTTTTCTACTTTCAATGGCACAAATGAAAATCGTTGGGATAATGACTATGACAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTTAAGGCTGCTCAGCCAAGAACTAGAAAAACTTCAGCTATATTTGATCCCAAGTTCCACCATGTTTTTTATGGGGATGCCAAGGGTTTTGGCCGAAAATTTTTTTCCTTCTGCTATTCATATGTTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTACAACAATGGAACAAGATCTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTAATATATGTGAAGGAGGATGATAAATGTATTGCTATCAATTGGACAATGACAACAACACTTGTTTTTTTTAGAAGCATTAATGATTTGATATATTTCTTTAACATTCTTCTCCAGTTTAGGCTGGCTTATGTTTCTCCTGAGTCAATGGTAGTAGGTGCTGGAGATTTAGTTGACCAACCCAAGAAAATTGCTGTTAATTATCTGAAGAGTTATCTTTTTATTGACCTATTTGTTGTATTTCCTCTTCCTCAGGTAATGATATTATCTGTCCTACCAAAGTACCTGGGATCATCTGGAGCAAATTATGCTAAAAATCTTCTCCGTGCAGCAATCCTTGTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTCCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAAATGCCTGCCATGATTCTAATATCCGTGGATGCTCAACATTTATTGATTGTGGACGTTCATCTGGCCGTAAGTCAGATATATGGAGCGAAAATGTGAATGCCTCTGCATGTTTGAATGCCAGTTCCGGTGCTTTTCAATATGGAGTCTATGTAAATGCTGTAGCACTTACTACAGAAACTAGGGTGGTCAACAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCAAACCCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACGATGGCCATCATAGGTTTGGGACTCTTACTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAACAATGGATGAGCCACCGTCGCTTGCCAGAAGATCTAAGAAGGAGAGTACGACAAGCTGAACGGTATAATTGGGCAGCAACAAGGGGTGTAAATGAAGACACGCTTCTGGAGAATTTACCCGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCGAGTTTGTTAAGAAAGTTCGCATCTTTGCCCTGATGGATGAGCCTATCTTAGATGCAATTTGCGAGAGACTAAAGCAAAAGACATACATCAAAGGAAGTAAAATTTTGACTCAGGGTGGTCTTGTAGAGAAAATGGTCTTTGTTGTTAGAGGGAAATTGGAGAGCTTTGGAGATGATGGAACTAGTGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTCACATGGTATCTTGAGCATTCTTCTGTAACCACAGATGGAAAAAAAGTAAGGGTTCAAGGACAGAGGTTGCTGAGTAATAGGACTGTAAGATGCTTAACAAATGTAGAAGCATTTTCACTTCGTGCCGGAGACCTTGAGGAACTCACAATTCTTTTCACTAGATTCTTGCGGAACCCTCATGTTCAAGGAGCTCTAAGGTATGTATCACCTTATTGGAGATCCCTTGCAGCAAGTCGTATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTAAGTCGTGCCTATACCTGTCAATCAGATCAAACATTCTGA 2304 0.4058 MARFEKDEVPMLSETRAQLSDEFVDSNFRRLVSRTRSASISIPMASLESYEKETSLVGHTGPLRSVRKTPFVQMSGPLYATHGTSNLSGQNIAATGNKVVESKTENFSTFNGTNENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPRTRKTSAIFDPKFHHVFYGDAKGFGRKFFSFCYSYVPGVMNPHAKVVQQWNKILAIFCLVAIFVDPLFFFLIYVKEDDKCIAINWTMTTTLVFFRSINDLIYFFNILLQFRLAYVSPESMVVGAGDLVDQPKKIAVNYLKSYLFIDLFVVFPLPQVMILSVLPKYLGSSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSFWYLFGLQRVNQCLRNACHDSNIRGCSTFIDCGRSSGRKSDIWSENVNASACLNASSGAFQYGVYVNAVALTTETRVVNKYVFALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEDTLLENLPEDLQTDIRRHLFEFVKKVRIFALMDEPILDAICERLKQKTYIKGSKILTQGGLVEKMVFVVRGKLESFGDDGTSVPLSEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRLLSNRTVRCLTNVEAFSLRAGDLEELTILFTRFLRNPHVQGALRYVSPYWRSLAASRIQVAWRYRKKRLSRAYTCQSDQTF* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0748 767 Gene3D Jelly Rolls 594 718 IPR014710 -
Vra1g0748 767 CDD CAP_ED 596 712 IPR000595 -
Vra1g0748 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 761 - -
Vra1g0748 767 ProSiteProfiles cAMP/cGMP binding motif profile. 596 664 IPR000595 -
Vra1g0748 767 Gene3D - 206 521 - -
Vra1g0748 767 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 761 - -
Vra1g0748 767 Gene3D Helix hairpin bin 523 588 - -
Vra1g0748 767 SUPERFAMILY cAMP-binding domain-like 524 716 IPR018490 -
Vra1g0748 767 SUPERFAMILY Voltage-gated potassium channels 200 524 - -
Vra1g0748 767 Pfam Ion transport protein 207 524 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0748 Vra-Chr1 8799964 8810505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0748 5 673 Ion Channels AT3G17700 61.095 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0748 K05391 - ccaj:109789004 1347.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0748 1 8799964 8810505 Vra1g0748 1 8799964 8810505 ECH