Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0747 ATGGCTAATTTTGAGAATGACAAGCGCCCAATGCTGTCGGATACAGATGCACAACCATACGATGAACCTTCGGATTCTAAATTCCTAAGGATGGTAACCAGGACTCAAAGTGCTTCAATTTCTATTCCCATGAGCTCCTTGGAGTCATATGAGAAAGAAACTAGCCTTGTGGGACATACTGGTCCACTTCTGAGCAAGAGAAAAACACCCTATATGCATATGAGTGGTCCATTATATGCTACCACTGGAAGTGGAAATCTTTTGCAGAAGCATGTTGTATCGGGAAACAAAGCAGATGACAGAAAGACAGATAATTTTTCTACTCTCCATGGCTCAAGTTCAAATTACCAAAACAGTGACTATGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAGCTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCTCAGCAAAGAAATCCAAAATCTTCTGCTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGGAAACTTCCTTCTTTCTTTTCTTCTTATGTTCCTGGAGTTATGAACCCTCACGCTAAAGTTGTACAAAAGTGGAGCAAATTTTTGGCCATTTTTTGCTTAATTGGTATTTTTGTTGACCCATTGTTTTTCTTTTCACTCTATGTGGAGAAGGTGAATAAATGCATTGTTATCAACTGGCCATTGGCAACAACACTTGCTTTAGTTAGATGCGTGAATGATTTTATTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGCGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTCCTCATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGTTATTATTTGTCCTACCAAATTCCTTGTCGGGAGCAAATTATGCCAAGAATCTTCTGCGTGCAGCAATATTAGTGCAATATTTTCCCAAATTATTCAGGTTTCTGCCACTGCTGATCGGCCAATCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTTATTATAAATCTTCTCATTTTTATGCTTGCTAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAACCAGTGTTTGCGGAAAGCCTGTCATAACTCTACTATACCTGGATGCATGAAGTTCATTGATTGTGGACGTGGTCGTCCAAATTTCACATCAAATCCGTGGATCAACAATACTGATGCTGTTGCTTGTATGGATTCTTCCGGTTTCACTTATGGGATTTATCAGTCTGCTGTACCACTTACTATAGAAACTAATGTAATCAACAAATACGTGTACTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCTAGTTCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTGTGGCCATCATAGGATCGGGACTCTTACTTTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAACTGGAAATGCAACTTAGAGGTCGTGATGTTGAGCAGTGGATGAGCCATCGTCGATTACCTGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTACAGTTGGGCCGCCACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTGCAGAGAGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAATTCGGATTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATTAAAGGAAGTAAAATTCTAAGTCATGGTTGTCTAGTAGAAAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACCAGAATTCCTCTATCTGAAGGGGATGCATGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTCAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTGCACTCTCTGCTTCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTCCAAGGAGCCCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCGACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGTTAATTCCACACCATCAGATTGA 2283 0.4087 MANFENDKRPMLSDTDAQPYDEPSDSKFLRMVTRTQSASISIPMSSLESYEKETSLVGHTGPLLSKRKTPYMHMSGPLYATTGSGNLLQKHVVSGNKADDRKTDNFSTLHGSSSNYQNSDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKSSARWDPKFHNALYGDAKSFVRKLPSFFSSYVPGVMNPHAKVVQKWSKFLAIFCLIGIFVDPLFFFSLYVEKVNKCIVINWPLATTLALVRCVNDFIYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMLLFVLPNSLSGANYAKNLLRAAILVQYFPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRKACHNSTIPGCMKFIDCGRGRPNFTSNPWINNTDAVACMDSSGFTYGIYQSAVPLTIETNVINKYVYSLFWGFQQISTLAGNLVPSYFVWEVLFTVAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRIFALMDEPILDAICERLRQKTHIKGSKILSHGCLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFALSASDLEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSTPSD* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0747 760 CDD CAP_ED 592 708 IPR000595 -
Vra1g0747 760 Gene3D Jelly Rolls 590 714 IPR014710 -
Vra1g0747 760 Gene3D Helix hairpin bin 519 584 - -
Vra1g0747 760 MobiDBLite consensus disorder prediction 1 25 - -
Vra1g0747 760 MobiDBLite consensus disorder prediction 9 23 - -
Vra1g0747 760 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 5 757 - -
Vra1g0747 760 SUPERFAMILY cAMP-binding domain-like 520 712 IPR018490 -
Vra1g0747 760 Pfam Ion transport protein 204 519 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra1g0747 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 757 - -
Vra1g0747 760 SUPERFAMILY Voltage-gated potassium channels 199 520 - -
Vra1g0747 760 MobiDBLite consensus disorder prediction 95 122 - -
Vra1g0747 760 ProSiteProfiles cAMP/cGMP binding motif profile. 592 660 IPR000595 -
Vra1g0747 760 Gene3D - 200 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0747 Vra-Chr1 8776318 8787052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0747 5 670 Ion Channels AT3G17700 61.037 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0747 K05391 - gmx:100795427 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0747 1 8776318 8787052 Vra1g0747 1 8776318 8787052 ECH