Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0746 ATGGCTAATTTGGAGAGAGATGAGGTGGCAATTCTATCAGATTGTCATCCTCAAGTATCAGTTGAAGTCCTTGATTCTAGATTCCCAAGGCATGTATCTAGGACTCGAAGTGTATCAATTTCTATTCCCACCACACTCACAGAGCCACTTGAAAGAGATACTAATATTGTGGGATACACTGGTCCCCTACGAATTCAGAGAATAACTCCATTTAATCAGATGAGTGGTCCATTGCATGTTACTAATAGACCTGGAAACCTTTTTCGGCAGAATAAAGTGGCACCCCAGTCACAAGCAGAAGAAAGTAAGACAGAAAATTTTTCTTCATGCTGTGGCATCATGGGTGAAAATGATTTGCAGAACTATGCTTGCAAGAATGAACATTTAGTTAGGTCCGGTCCACTGGGAATGTGTAGTGATCCATATTGTACAACATGCCCAACTTACTTCAAGGCTATTCAGAAAAGTAGTTCAAATGCTTCGGGTATATTTAATCATGAGTTTCGGAATACTCTTTGCGATGATGCCAAGAATTGGGCGAGAAGACTTTTTACTTTCTTGATTCCCCATGTTCCTAGAGTTATCAATCCTCATAATAAACTTGTACAACAATGGAATCAATTTTTTATAATATGTTGCTTGGTGGCAATTTTTGTGGATCCGTCATTTTTTTTCTTGCTCTCTGTGCAGAAGAATAATAAGTGTATTGTTATAGACTGGGCTTTTACAAAACTTCTTGTTGCACTTAGAAGCATGAATGATTTCATACACTTCCTAAACATTGTTCTGCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCTGGGGAGTTAGTTGACCATCCAAAGAAAATAGCTCTTCATTACATTAAGACATCTTTTTTCATTGACTTATTTGTTGTCCTTCCACTTCCTCAGATATTCATATTGTTTGTCCTACCATCGCACTTAGGGGCAGGGTCAGCAGGAGCAAACTATGCAAATAACCTTTTGCGCATTGTGATCCTCGTCCAGCATATCCCTAGACTATGTAGATTTCTTCCTATGATATTTTCTCCAGCTGGATTCGTATTCGAGTCTCCGTGGGCAAATTTCTTTATAAATCTTTTTACCTTTGTACTGTCTGGCCATGTTGTTGGATCCTGGTGGTACCTCTTCAGTTTGCAGAGGGTTAATCAGTGTCTACGAGAGGCCTGTGATACCACACATATTGCTGGATGCACAAAATTCATCGATTGTGGACATGGAATAACTGAAGCATATCAACATAACAATAGTTGGCATAATTGGAGGAACAATCCTGTTGCAAATGCTTGTTTTACTGAAGATGGTTTTCGTGATGGTTATGGTATCTTTATTAAAGCTGTCAACCTTACTGCACATCCTAATCTATCTACTAGATATTTCTATTCATCATTTTGGGGATTTCAGCAAATTAGTACACTGACTGGGAATTTAATCCCTAGCTATTTTGTTCCCGAAATCCTTTTTACTAAGGCCATTCTTGCGTCAGGACTGTTGCTGTTTGCTCTTCTCATTGGAAACATACAGAATATTCTCCAGGCTCTTGGACGCAGGAAGCTAGAGATGTCACTTAGGCGACGTGATTTTGAGCAATGGATGAGCCACCGGCGCTTAGGAGATGATATAAGAAGGAGAGTGCGACAGGCTGAACGATATAACTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTCTTGGAGAATTTGCCAGAAGACCTCCAAAGGGAAATTAGACGTCATCTCTTCACATTTATTAAGAAAGTTCGAATTTTTGCCTTATTGGATGAGCCTATCTTGGATGCCATATGTGAGAGGCTAAGGCAGAAAACATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCGTTGGCGAAGATGGAATCAGTGCTCCCCTTTATGAAGGGAGTGTCTGTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATTCCTTAGCAAGCAAAGGTTGCAGAAAAGCAAGGATTCCAAGGCAAAAGCTGGTTAGTAACAGAAGAGTAATATGCTTAACAAATGTGGAGGCATTTTCCCTTAGAGCAGCAGACCTTGAAGAAGTTACAGGCCTATTTGCAAGATTCTTTAGGAATCCCCGTGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATGCTTTGCAGCAACAAGCATTCAGGTTGCATGGAAATACAGAATGAAATGTCTTCGTCGTGCCAAAACCACATAA 2304 0.4036 MANLERDEVAILSDCHPQVSVEVLDSRFPRHVSRTRSVSISIPTTLTEPLERDTNIVGYTGPLRIQRITPFNQMSGPLHVTNRPGNLFRQNKVAPQSQAEESKTENFSSCCGIMGENDLQNYACKNEHLVRSGPLGMCSDPYCTTCPTYFKAIQKSSSNASGIFNHEFRNTLCDDAKNWARRLFTFLIPHVPRVINPHNKLVQQWNQFFIICCLVAIFVDPSFFFLLSVQKNNKCIVIDWAFTKLLVALRSMNDFIHFLNIVLQFRLAYVAPESRVVGAGELVDHPKKIALHYIKTSFFIDLFVVLPLPQIFILFVLPSHLGAGSAGANYANNLLRIVILVQHIPRLCRFLPMIFSPAGFVFESPWANFFINLFTFVLSGHVVGSWWYLFSLQRVNQCLREACDTTHIAGCTKFIDCGHGITEAYQHNNSWHNWRNNPVANACFTEDGFRDGYGIFIKAVNLTAHPNLSTRYFYSSFWGFQQISTLTGNLIPSYFVPEILFTKAILASGLLLFALLIGNIQNILQALGRRKLEMSLRRRDFEQWMSHRRLGDDIRRRVRQAERYNWAATRGVNEEMLLENLPEDLQREIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDGGLVEKMVFIVRGKLESVGEDGISAPLYEGSVCGEELLTWCLEHSLASKGCRKARIPRQKLVSNRRVICLTNVEAFSLRAADLEEVTGLFARFFRNPRVQGAIRYESPYWRCFAATSIQVAWKYRMKCLRRAKTT* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0746 767 CDD CAP_ED 602 718 IPR000595 -
Vra1g0746 767 Gene3D Helix hairpin bin 529 594 - -
Vra1g0746 767 Gene3D Jelly Rolls 600 724 IPR014710 -
Vra1g0746 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 9 766 - -
Vra1g0746 767 Gene3D - 185 527 - -
Vra1g0746 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 766 - -
Vra1g0746 767 SUPERFAMILY Voltage-gated potassium channels 197 525 - -
Vra1g0746 767 ProSiteProfiles cAMP/cGMP binding motif profile. 602 670 IPR000595 -
Vra1g0746 767 Pfam Ion transport protein 204 530 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra1g0746 767 SUPERFAMILY cAMP-binding domain-like 530 726 IPR018490 -
Vra1g0746 767 SMART cnmp_10 602 737 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0746 Vra-Chr1 8764898 8772203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0746 5 682 Ion Channels AT3G17700 59.004 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0746 K05391 - gmx:100795955 1252.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0746 1 8764898 8772203 Vra1g0746 1 8764898 8772203 ECH