Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0738 ATGTGCAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAGCTTCGAGAATTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTTCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAACTGGACCCGAGAATAAACAGAAGTCCTTTTACGGAGGAAGAAGAAGAGAGGCTTCTTGCTTCTCACAGGATTCATGGGAACAGATGGGCTGTGATAGCAAGACACTTCCCAGGAAGAACTGATAACGCAGTAAAAAATCATTGGCATGTGATGATGGCAAGGATTCGGAGAGAAAGGTCCAAAGTTTATAACACCAAACAGCCACTTTTTCCTCTAAACCTTGACAGCAATTTTGAGACTAATTCTATCCCTTCTTTTGTTGAAAAGTACTATGAAAAGTTCAGCCACCCTTCTGTCACACACACCCCTTTTCACTTTCCCAAAAACTTCCACTTTCAACATCCAACTTCTGCTTCCACACTGCCTCCAGAGAAGAATCAATCAGTAGAGTTCTATGATTTTCTTCAAGTAAATACGGATTCCAATAAAAGTGAAGTGACAGACATAGCCAGAAGAGACGAAGAGGAAGTGAGTCAAGATGGTGTGGAACTGAAGAACATTGGTGTTCCATTCATTGATTTTTTGTCTTCTGGAACCTACTAA 690 0.4275 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYNTKQPLFPLNLDSNFETNSIPSFVEKYYEKFSHPSVTHTPFHFPKNFHFQHPTSASTLPPEKNQSVEFYDFLQVNTDSNKSEVTDIARRDEEEVSQDGVELKNIGVPFIDFLSSGTY* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0738 229 PANTHER MYB PROTEIN-RELATED 1 227 - -
Vra1g0738 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vra1g0738 229 Gene3D - 57 117 - -
Vra1g0738 229 Gene3D - 4 55 - -
Vra1g0738 229 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vra1g0738 229 SMART sant 3 52 IPR001005 -
Vra1g0738 229 SMART sant 55 103 IPR001005 -
Vra1g0738 229 CDD SANT 7 48 IPR001005 -
Vra1g0738 229 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Vra1g0738 229 PANTHER MYB-RELATED PROTEIN A-LIKE 1 227 - -
Vra1g0738 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vra1g0738 229 Pfam Myb-like DNA-binding domain 7 67 - -
Vra1g0738 229 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Vra1g0738 229 CDD SANT 58 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0738 Vra-Chr1 8697182 8699620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0738 1 227 MYB Transcription Factor Family AT1G17950 56.855 3.38e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0738 Myb_DNA-bind_6 8.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0738 K09422 - gmx:100811746 392.119