Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0736 ATGGCAGACACAAATTCAGTTGAAGTGATTTTGGATTTTCTGAGGAGGAATAGGTTCACGCGAGCTGAGGCGGCTTTGCGAAGTGAGCTCAGTAACTGTTCTGATGTGAATGGTTTCTTGCAAAAGCTTACATTGGAAGAAAAGGACTTGCGTGGCGGGTTGCACAATGATAAGGGGAAGCCTGTTATAGAAAATCATGGGTTGGATTCTCGTGACGGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAATGTGGGACTGGTAGAAATGCTGCAGAAGAAAGCAAGTGGAAAACTGTTGCTCCCACAGGGGAAAGGAATAAGTCTGGTGAAGTGGTTGGAACGAGTGAAAAAAACTTTACCTTCTCCAAGAGTTCGGAGGATAGTGTTCTTGATTTGTACTCATGGAAGTTTAATCCCAGCAATGGTCTTGTTGAACCTTACCAAAACGATAGTGGAAGTAGGCTTAGTAATGCTTTGAAGGCCCCGGTATCTCAGCAATCAAAGTATCAAACTGGCGAAGTTCCTGCTGCAACCAACAGTAATGTGAAATCTGGGGAGGGGGAGGTAAATAATGTACCTGCAGAAAAAACAACCTTGTGGCTTGGAAGTAGTGGTAAAGCCTCTACGGAACCAAAGTATGACCTTATGCATAACAAAGAACCTAAGGAACTTGATCTGCAGCTCAAATTTAATGCTTCATCTCTTAAAGAGAGCTTGACAGATAATCACTTGTCAAGAACTGATGAGAATATGAACTCATCTACAGATCTATGGAAAGATTGTTCCGTGAAGACTGTTTTCCCTTTCTCAAAAGGGGATATGTCTACAAGCTACAACGGTTCAACTTATTCTGACAGACAAGAGGAGAAGAGAAGGGCAGAAAACGGTGATGTTATGACATCAATAAAAGAGCAAGTGGATGAAGTAGGAAGAGCTCTTTACTTAGGAAAGTTGCAAGGCAGTTCTGGCAGCTTAAATTTTCCTCTTGAACTGGAGAATCCAAAAGAAGAGTTTCCTAGGCTTCCTCCTGTAAAAATCAAGTCAGAAGATAAGCCCTTGACTTTTAACTGGGGAGATAAGTTTGAGTCTGACGGACTGGCTGTGAAACTCACAGGTGCCGACAACTCCTTTCTTATAGGGTCATATTTGGATGTCCCTATTGGACAGGACATTAAAACTACTGGTGTGAGGAAGTCTATAGGGGGTAGCTGGCTGTCTGTAAGTCAAGGGATTTCTGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGGGTTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGACGAATATGATGATGATGAAGATGTTGGGTACATGAGACAACCCATTGAAGATGAGGCCTGGTTTTTGGCGCATGAAATTGATTACCCCAGTGATAATGAAAAGGGGACGGGGCATGGAAGTGTTCCAGATCCTCAGGAAAGAGGTCCATCCAAAGATGAAGAGGATGATCAATCTTTTGCTGAGGAGGATTCTTATTTCTCTGGTGAGCAATATATTCTACCAAAAAATGTCGAGCCGGTCACTTCAGATGATCCTATTGGTCTAACTATTACTGAAATGTATGGAAGAACCAATGGCAACGATGTAATGACTCAATATGATACACAACTGGTGGACGTTGAAGAACTGAATCTGATGCATATAGAACCTGTCAGGCAGGGCTTTGTCACTCACCAAAATGATCTCATCATGCTGGGAGATGGGCGGGTTCTGAATCATGGTGCGAGGCCACGGATTGAGGACATGGAAGATGATCAGCATGGTTCAGTTAGATCAATTGGAGTGGGGATCAACAGTGATGCTGCTGATATTGGTAGTGAAGTGCATGGAAGTTTGATTGGTGGTAGTAGTGAGGGGGATTTAGAATATTTTCGTGATCATGATACTATGCACAGTGGCACCAAACACACTCATCAGGATTTGGACAAGAGTTCTAGTAACAAATCAGTTAAAAATAACAAGAAAACCGACAAGAATGAATCAAATAAATATGTCATAGACAATGATAAAGATGCATGCTCACAGATAAAAACTCATGCTGATGGGAACTTTTCATTTCCCCAATCTCTTAGAGATGACCAGATGATTCAGGCTGGCTCCAGTAAGTCCCTATGGACAAATAATGGTAATGTAGATGAAACCGATGACTGTCTTAATGCCTTTGCAGGCTCTGATGACATGCTTTCATCTTGGAGGCGGAAGAGCAGTGATTCTTCGCCTGTTAAAAGTTCTAGGGATGATAATAATGCTATCGTGGTAAGATCCAGAAACTCTTCTCCAACTACAGTCTCAAATTATGGGTATACTGATGGAGAGCATGTCAAGCTAGAAAAGGATGAAAAGGTAAGTGTTGTAAGGGAAGACGATATAGGTGCATCACTAGAGGATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAAGAGGAAGAATTTGAAACCTTCAATCTAAAGATCGTGCACAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTGAATTCCGTAATAGCTGGGCGCTATCATGTCACCGAGTATCTTGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTGCACACAGGCATGGATGTTTGTGTTAAGATTATAAAAAACAACAAAGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTTCCACCTTCTAAGATTGTATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAGTTGCTCAAAGCCAACCTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTTTATTTCACGATGCCAAGGTTGCAGTCAATCACCATTCAGTGTTTGGAGGCACTTCAGTTTTTGCATAGTCTTGGACTAATACATTGTGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAAGTGAAGGTTATTGATCTCGGAAGTAGTTGTTTTGAGACAGATCATCTTTGCTCGTATGTTCAGTCCAGGTCTTATCGTGCTCCTGAGGTTATTCTGGGTCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAACGTCCTCTTCCAAAATGATTCCCCTGCTACATTACTTGCTCGGGTGATCGGGATCATTGGCCCAGTTGATCAAAGTTTACTTGCCAAAGGACGGGATACATATAAATACTTCACAAAAAATCACATGCTTTATGAACGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCAAAAAAGACATCATTGAGGCATAGATTACCAATGGGAGACCAAGGCTTCATCGACTTTGTTGCTCATCTGCTCGAGGTTAACCCAAAGAAGCGACCTTCTGCGTCCGAGGCCCTGAAGCACCCATGGTTATCATACCCTTATGAACCAATATCATCTTAA 3543 0.4155 MADTNSVEVILDFLRRNRFTRAEAALRSELSNCSDVNGFLQKLTLEEKDLRGGLHNDKGKPVIENHGLDSRDGVEVSKELIVKEIECGTGRNAAEESKWKTVAPTGERNKSGEVVGTSEKNFTFSKSSEDSVLDLYSWKFNPSNGLVEPYQNDSGSRLSNALKAPVSQQSKYQTGEVPAATNSNVKSGEGEVNNVPAEKTTLWLGSSGKASTEPKYDLMHNKEPKELDLQLKFNASSLKESLTDNHLSRTDENMNSSTDLWKDCSVKTVFPFSKGDMSTSYNGSTYSDRQEEKRRAENGDVMTSIKEQVDEVGRALYLGKLQGSSGSLNFPLELENPKEEFPRLPPVKIKSEDKPLTFNWGDKFESDGLAVKLTGADNSFLIGSYLDVPIGQDIKTTGVRKSIGGSWLSVSQGISEDTSDLVSGFATIGDGLSESVDYPNEYWDSDEYDDDEDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPSKDEEDDQSFAEEDSYFSGEQYILPKNVEPVTSDDPIGLTITEMYGRTNGNDVMTQYDTQLVDVEELNLMHIEPVRQGFVTHQNDLIMLGDGRVLNHGARPRIEDMEDDQHGSVRSIGVGINSDAADIGSEVHGSLIGGSSEGDLEYFRDHDTMHSGTKHTHQDLDKSSSNKSVKNNKKTDKNESNKYVIDNDKDACSQIKTHADGNFSFPQSLRDDQMIQAGSSKSLWTNNGNVDETDDCLNAFAGSDDMLSSWRRKSSDSSPVKSSRDDNNAIVVRSRNSSPTTVSNYGYTDGEHVKLEKDEKVSVVREDDIGASLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPSDKFHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPVDQSLLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0736 1180 ProSiteProfiles Protein kinase domain profile. 869 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0736 1180 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 1178 - -
Vra1g0736 1180 SUPERFAMILY Protein kinase-like (PK-like) 858 1173 IPR011009 -
Vra1g0736 1180 CDD PKc_DYRK_like 869 1171 - -
Vra1g0736 1180 Gene3D Transferase(Phosphotransferase) domain 1 923 1171 - -
Vra1g0736 1180 MobiDBLite consensus disorder prediction 749 769 - -
Vra1g0736 1180 MobiDBLite consensus disorder prediction 477 507 - -
Vra1g0736 1180 Pfam Protein kinase domain 869 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0736 1180 MobiDBLite consensus disorder prediction 752 769 - -
Vra1g0736 1180 PANTHER - 2 1178 - -
Vra1g0736 1180 MobiDBLite consensus disorder prediction 167 192 - -
Vra1g0736 1180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Vra1g0736 1180 SMART serkin_6 869 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0736 1180 Coils Coil 821 841 - -
Vra1g0736 1180 Gene3D Phosphorylase Kinase; domain 1 863 950 - -
Vra1g0736 1180 MobiDBLite consensus disorder prediction 167 190 - -
Vra1g0736 1180 MobiDBLite consensus disorder prediction 647 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0736 Vra-Chr1 8669320 8676983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0736 868 1166 MAP Kinase Gene Family AT5G19010 31.034 2.30e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vra1g0736 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0736 - - gmx:100786225 2127.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0377 1 4961853 4972816 Vra1g0736 1 8669320 8676983 PCT