Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0730 ATGGATTTTGGTAGCGCAGAAGGTCCTCACAGAGAGAATCGGCGATTCCCTTCGCCACCACTTACACCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCTTGCTTGTCGCCGCTGCAGCCGCTGTCTATCGCTCGACGGAGTCTTGATGAGTGGCCGAAGGCGGGCTCTGACGACATCGGCGAGTGGCTGCAACCGCCCACCATCCCGGGAGGGAGAGGTAATGGTAGCAATGGTGAAAGGACTTTGTGGCTGCAGGATAGTCCCTCCGAGGACACTACTAGTATCTTGTATGATGTCATTGACTACTTTGAGGATGTTAGGAAAAAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCTACATCTCTGGTGATTGCTTACCTTATGTGGAGGGAGGGACAAAGTTTTGATGATGAAGGCTGCAAGAGGGATTGGAGGTTGGGTCTAGAGTATGTGGATCTTTACCTAATCCATTTTCCAGTGAGGCTGAGACAAGGAGCTAAAGGAATCAAGTATGGCAAAGAAGACATTCTTCCTTTGGACATGAAAGGAACATGGGAAGACATGGAACAATGCTGTAAATTGGGTTTGGCCAAATCCATTGGTGTAAGCAATTTTGGGGTGAAAAAGCTTTCACAGCTTGTTCAGAATGCTATTATTACTCCTGCTCTTGTCCAGGTGGAGATGAACGCGGCATGGCAACAGGAAAACCTGAGAAAATTCTGCAAAGAGAGGGGAATTCATGTGAGTGCATGGTCTCCTCTGGGAGCCAATGGAGCTGTGTGGGGTTCCCTTGCTGTTATGGACAGTCCTATTCTGAAGGACATTGCATACAAATCAGGCAAGAGTGTGGCACAGGTTGCACTGAGGTGGATAATAGAGGAAGGTGCAACTCCAATAGTGAAGAGCTTCAACAGTGAGAGAATGAAGCAAAATCTTAAGATTTTCGATTGGGAGCTGAGTGAGAGTGACTCAGAGAAGATTAAAGAAATACCACAGCATAGGGGTTTCAAGGGTGAACGTTTTGTCTCTGAGTTTGGCCCTTTCAAAACTTTCGAAGAACTTTGGGAATGA 1086 0.4788 MDFGSAEGPHRENRRFPSPPLTPRSQQNCKARSCLSPLQPLSIARRSLDEWPKAGSDDIGEWLQPPTIPGGRGNGSNGERTLWLQDSPSEDTTSILYDVIDYFEDVRKKGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDEGCKRDWRLGLEYVDLYLIHFPVRLRQGAKGIKYGKEDILPLDMKGTWEDMEQCCKLGLAKSIGVSNFGVKKLSQLVQNAIITPALVQVEMNAAWQQENLRKFCKERGIHVSAWSPLGANGAVWGSLAVMDSPILKDIAYKSGKSVAQVALRWIIEEGATPIVKSFNSERMKQNLKIFDWELSESDSEKIKEIPQHRGFKGERFVSEFGPFKTFEELWE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0730 361 PANTHER ALDO/KETO REDUCTASE FAMILY OXIDOREDUCTASE 150 361 - -
Vra1g0730 361 Gene3D - 146 361 IPR036812 -
Vra1g0730 361 PRINTS Aldo-keto reductase signature 146 164 IPR020471 GO:0016491
Vra1g0730 361 PRINTS Aldo-keto reductase signature 193 210 IPR020471 GO:0016491
Vra1g0730 361 PRINTS Aldo-keto reductase signature 227 256 IPR020471 GO:0016491
Vra1g0730 361 PRINTS Aldo-keto reductase signature 271 295 IPR020471 GO:0016491
Vra1g0730 361 PANTHER ALDO/KETO REDUCTASE 150 361 - -
Vra1g0730 361 Pfam Aldo/keto reductase family 150 335 IPR023210 -
Vra1g0730 361 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 97 141 IPR000387 GO:0016311|GO:0016791
Vra1g0730 361 CDD DSP 81 142 - -
Vra1g0730 361 MobiDBLite consensus disorder prediction 1 33 - -
Vra1g0730 361 Pfam Dual specificity phosphatase, catalytic domain 82 140 IPR000340 GO:0008138|GO:0016311
Vra1g0730 361 ProSitePatterns Aldo/keto reductase family putative active site signature. 304 319 IPR018170 GO:0016491
Vra1g0730 361 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 83 142 IPR029021 -
Vra1g0730 361 SUPERFAMILY NAD(P)-linked oxidoreductase 150 346 IPR036812 -
Vra1g0730 361 MobiDBLite consensus disorder prediction 19 33 - -
Vra1g0730 361 ProSitePatterns Tyrosine specific protein phosphatases active site. 115 125 IPR016130 GO:0016311|GO:0016791
Vra1g0730 361 ProSitePatterns Aldo/keto reductase family signature 2. 193 210 IPR018170 GO:0016491
Vra1g0730 361 Gene3D Protein tyrosine phosphatase superfamily 79 145 IPR029021 -
Vra1g0730 361 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0730 Vra-Chr1 8599835 8603416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0730 6 75 Protein tyrosine phosphatase (PTP) family AT3G55270 65.714 9.25e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0730 K22374 - gmx:100799650 383.645