Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0725 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGCCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACTCCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCCAAGACTTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAGACACCGGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACTTGTTTGCACCATGACCCTTGTCATGCCTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGAAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGCGGTACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCGAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCCTCTGCGTGCCTTTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGGATCATAATACCAAAGCCAACTGAACCACCCACAATTTTCATGAATAACCCTACTGCTCATGCTATCACCACTGCTGAAACCTCATCCAAGAACAACAAACTCCACCCCAACTTGGATCTCCAACTCTCAACTCCCACCACCACCAACAACAACAACAACATCAACAACAACAGTTCAAACGTTGCAAACCCCATTGATGCTGCAATATCAACATCATTATCACCTAAGAGGGATCATCACGAGAACCACTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAATGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACAATGGGAAGCAGTCCAACATGGCCTTATTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAGGCACAAGCCGAACTCGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACCTGCCTCGCTTGCAAACAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTTGAAAATGATAACGGAAAAGACCATGGCAAAGACAACTAA 1410 0.4794 MLANNLSPSSVPTSEPFPCTENATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRIIIPKPTEPPTIFMNNPTAHAITTAETSSKNNKLHPNLDLQLSTPTTTNNNNNINNNSSNVANPIDAAISTSLSPKRDHHENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNGKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCLACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKDHGKDN* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0725 469 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Vra1g0725 469 Gene3D Classic Zinc Finger 119 195 - -
Vra1g0725 469 PANTHER OS03G0310200 PROTEIN 1 454 IPR039288 GO:0009630
Vra1g0725 469 MobiDBLite consensus disorder prediction 193 231 - -
Vra1g0725 469 Gene3D Classic Zinc Finger 35 97 - -
Vra1g0725 469 MobiDBLite consensus disorder prediction 194 220 - -
Vra1g0725 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vra1g0725 469 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 454 - -
Vra1g0725 469 MobiDBLite consensus disorder prediction 1 24 - -
Vra1g0725 469 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vra1g0725 469 MobiDBLite consensus disorder prediction 298 343 - -
Vra1g0725 469 Coils Coil 357 412 - -
Vra1g0725 469 MobiDBLite consensus disorder prediction 309 343 - -
Vra1g0725 469 MobiDBLite consensus disorder prediction 1 44 - -
Vra1g0725 469 MobiDBLite consensus disorder prediction 249 285 - -
Vra1g0725 469 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Vra1g0725 469 SMART c2h2final6 57 79 IPR013087 -
Vra1g0725 469 SMART c2h2final6 98 128 IPR013087 -
Vra1g0725 469 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0725 Vra-Chr1 8525172 8528465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0725 20 459 C2H2 Transcription Factor Family AT2G01940 55.310 9.22e-144 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra1g0725 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0725 K25871 - gmx:100800187 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0375 1 4946809 4949504 Vra1g0725 1 8525172 8528465 PCT