Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0723 ATGGATGGTGATAATGGTCTCAACATCCGTAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAGCCTTTGATCGGAGGGCGGAATGCTGCGGTTTTATCTGCCACAAATGGGGCATTTCACCACAGAGACATCAGTATGTCCCACGCTACATACCCTATGGAATACNNGAGAGATGCTTGGATTAGTAGTNANAGNGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCAGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAATTGCCGAAGGAAGAAAGGGCAGTGGAAGAGGAACCTGTTGTTGAGAAGGCAACTGGGGGCAGTCGTAAGAAAAGACAGAGTCCTAAGGTGCCGAAATCTCCCAAGGCAAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCAAGGGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGTATTGACATGGATATTTCTAGTATTCCAATCCCTGTTTGTTCATGCACAGGAGCAGCTCAACANTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATGTTGCACAACAGGCATGTCAGTTTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTTAAGAAAGTTTTGGAGAAACTTGCAGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAG 852 0.4507 MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSATNGAFHHRDISMSHATYPMEYXRDAWISSXXDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEERAVEEEPVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAAQXCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0723 283 Pfam GAGA binding protein-like family 1 283 IPR010409 -
Vra1g0723 283 MobiDBLite consensus disorder prediction 135 154 - -
Vra1g0723 283 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 283 - -
Vra1g0723 283 MobiDBLite consensus disorder prediction 94 172 - -
Vra1g0723 283 MobiDBLite consensus disorder prediction 114 134 - -
Vra1g0723 283 PANTHER - 1 283 IPR010409 -
Vra1g0723 283 SMART GAGA_bind_2 1 283 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0723 Vra-Chr1 8496119 8497906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0723 1 283 BBR or BPC Transcription factor family AT2G01930 51.007 2.53e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vra1g0723 GAGA_bind 3.5e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0723 - - gmx:100784091 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0723 1 8496119 8497906 Vra1g0723 1 8496119 8497906 ECH