Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0722 ATGGAAAACTCTTCATCCTCTTCATCTTCAAACTCTATGTATCGAGAGTGTCTCCGCAACCATGCAGCGAGTCTGGGTAGCTACGCTACTGATGGTTGCGGAGAATTCACTCTCGATATCGACGTCTCTTCTTCCTCCCTCCAGTGTGCAGCTTGCGGTTGTCACCGCAACTTCCATCGCAAAGTGACATGTCCCAGTGCGATGGAAGGTCTGCAGGGTGGAGGGAGTGGAGATATGATGGAATACTCTGGAGGAGACGTGGGAAGAATGGAGGTGGGAGAGAGGAGCAGCAGGAAGAGGTTCAGGACTAAGTTCAGTGCGGAGCAGAAGGAGAAGATGCTGGCGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAGAGAGGTGGATGATGAGATTGAAAGGTTTTGTAAAAGTGTTGGAGTTACAAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATCTTTCTTCCCTCACTCAGTGA 519 0.4894 MENSSSSSSSNSMYRECLRNHAASLGSYATDGCGEFTLDIDVSSSSLQCAACGCHRNFHRKVTCPSAMEGLQGGGSGDMMEYSGGDVGRMEVGERSSRKRFRTKFSAEQKEKMLAFAEKLGWKLQRREVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0722 172 Pfam ZF-HD protein dimerisation region 13 63 IPR006456 -
Vra1g0722 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 8 162 - -
Vra1g0722 172 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 62 IPR006456 -
Vra1g0722 172 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 98 156 IPR006455 -
Vra1g0722 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 162 - -
Vra1g0722 172 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
Vra1g0722 172 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 14 61 IPR006456 -
Vra1g0722 172 Gene3D - 83 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0722 Vra-Chr1 8480212 8481253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0722 14 156 ZF-HD Transcription Factor Family AT4G24660 44.311 7.98e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra1g0722 ZF-HD_dimer 6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0722 - - vun:114182488 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0374 1 4930240 4930931 Vra1g0722 1 8480212 8481253 PCT