Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0715 ATGCCCCAGAATAGCATTTTCCGAGACCAATCATCGAATCAGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTGCACTGGAGGGGATTCACCCTTTGATACATGGCCACAGCAAGCAGATGAAGATGACTATGCTCAAGGCTTCAAATCCCACAGTGATGGTTCAATCAAAGGTTGCAGCCCTTACCACACAGACACACAACTTTCTTTAGCAAACTCTACAACTTCTGTCACTGCTACTCCCTCTGAGGCTGACAGCACCTGGAGGAAGAGAAACTTTGTTAGACTCAGCCATCATCATGGGGCTTCTGAGGGTCAAATAAGACTCATCAATGGAATCCCTCTCTACAGTAACCTTTCTTCTTTGGACAACACCAGTACTGCTCCCTCAATAGAGAGAACCCCCACCAACAAGTTTTCCTTTCCTTCTCTATATTCACTTCCACACCCTCCTTATTCTGCCAATTCTGCTCCTAACTATAGCTATAATGGTGCTGTTGGGGGTGTAGCAGCAGAACCAATCTCAAGGTTTCATGATATAACCATGGAGAATACTCCAAGGCCTCAACAGTTTCAGTACTTTGATTACCCTCAGCAGCAGCAGCAGTTTGGGAATAGTACAAATTTTGGAACTTCTGAATTTTCTAATGGATTTGTGAGGTCAAGAATGTTGCCAAGGCAACAAAGTAGTAAGAGGAACATGAGGGCTCCGAGAATGCGTTGGACTAGTTCTCTTCACAACCGCTTTGTTCATGCTGTTGAACTACTTGGAGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTAATGGATGTGAAAGATCTAACACTAGCTCATGTGAAGAGTCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAACCTGCACCTTCTTCAGATGGGGATGAGGATTTCATGTCCATAACAGTCCCAAATAATCAAAATAAGAATTTTTTACCCAATCAGAGAGGAGCTCCAAATGCATCCCTGGATCATGATATGGGCCACACTTCCAGAAATCTATGGGCTAATTCTTCTACCAGTAGAGGAGCACGGATACAAGGTAGTGAACATGATTTGGAAGAACTTAGTCCGGAAGAAATCCTAGCATCTCAGCATTCTGGGAAATTTTCTGAGGGAAACAACAACTTTACACAAACAAGAAGCTTCAAGGATCAAAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAACAGAAGAATGA 1254 0.4338 MPQNSIFRDQSSNQIPDLSLHISLPNSAPSSICTGGDSPFDTWPQQADEDDYAQGFKSHSDGSIKGCSPYHTDTQLSLANSTTSVTATPSEADSTWRKRNFVRLSHHHGASEGQIRLINGIPLYSNLSSLDNTSTAPSIERTPTNKFSFPSLYSLPHPPYSANSAPNYSYNGAVGGVAAEPISRFHDITMENTPRPQQFQYFDYPQQQQQFGNSTNFGTSEFSNGFVRSRMLPRQQSSKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAPSSDGDEDFMSITVPNNQNKNFLPNQRGAPNASLDHDMGHTSRNLWANSSTSRGARIQGSEHDLEELSPEEILASQHSGKFSEGNNNFTQTRSFKDQNPSLEFTLGRSTEE* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0715 417 Gene3D - 244 301 - -
Vra1g0715 417 MobiDBLite consensus disorder prediction 298 417 - -
Vra1g0715 417 SUPERFAMILY Homeodomain-like 242 299 IPR009057 -
Vra1g0715 417 MobiDBLite consensus disorder prediction 384 417 - -
Vra1g0715 417 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Vra1g0715 417 MobiDBLite consensus disorder prediction 315 334 - -
Vra1g0715 417 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 415 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra1g0715 417 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 415 - -
Vra1g0715 417 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 245 298 IPR006447 GO:0003677
Vra1g0715 417 MobiDBLite consensus disorder prediction 348 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0715 Vra-Chr1 8399355 8407996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0715 225 413 G2-like Transcription Factor Family AT5G16560 50.505 1.37e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra1g0715 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0715 - - gmx:100796973 583.178