Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0713 ATGAAGACTTTCTCCTCAATTCAACTACCCCACCATTTTTATTGTGCAAGATTCTTCTCCTACCCAACCACAAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCATTTGCCAGGCAAAATCAGGCATAGATGGGTCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGGCCTTGTTCTTGAAGAAGCAAGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCACTCTAAACACAGATCTTGGTATCTTGCAGGAAGAGAGCTTACAACTCTGGAGATCAGGGATGCTCTTATCCCTTATCTTGAATCTCTGTTTGAAGAGCATGGTGACATTCTAGTGGATGTCGTGGAAAACTATCCAAATCCACCTGTTAAGGACAAATCTGCAGTGCCAGTACCTCCTTCCAGTCCCGTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCACTAGTGAGTGAGACAGACCCAGATGGTGGCAATCTGCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTCGGAGTATCACACATCGATTCCCAGCTTTTGCCTACTATAGCTTGGAGGGTAAAGTTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGGGTTCCAAGAGAGCACATTCCCATTATCCTCAGTAAAAGGCCTCAGTTATGTGGTTTCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTGGGTATTGACAAGAAGCAATGGCCAAAGGTGATCCATCGCTTCCCAGCCCTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTCCTTCTTGAATTGGGCCTATCTGAAGAGAATATAGGTAAGATTTTAACTCGTTGCCCCCATATCGTTAGTTATAGTGTAGAGGACAATCTCAGACCTACGGCAAAGTACTTCCGATCTTTGGGGGCTGATGTTGGCATTCTTCTATTCAGATGCCCACAGAATTTTGGACTTAGCATTGAGGCCAACCTGAAACCTATAACAGCATTTTTCTTGGAGAGGGGATATACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGATACCCAAACTCTGAGCTGGTTAAGTTTCCTCAGTATTTTGGATACAGTTTAGAGAAAAGGATTAAACCTAGATTTGCAATCATGAAGAAATCTGGGGTAAAGTTACTGCTGAACCAGGTTCTTTCTCTGTCAAGCAGCAACTTTGACAAGGCCTTGAAAAAGAAAATGAAAAAAATGCAAGATGGTTAG 1416 0.4174 MKTFSSIQLPHHFYCARFFSYPTTRTQLSFPAKVFICQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLALFLKKQGLSNAVAARTINKSDLFIDHLVSKLHSKHRSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPVPPSSPVLDSKKLKAVSLVSETDPDGGNLRPHIVYLMELGMDIEQIRSITHRFPAFAYYSLEGKVKPVVEFFLELGVPREHIPIILSKRPQLCGFSLSENLKPTMKFLESLGIDKKQWPKVIHRFPALLTYSRQKVMESIDFLLELGLSEENIGKILTRCPHIVSYSVEDNLRPTAKYFRSLGADVGILLFRCPQNFGLSIEANLKPITAFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPNSELVKFPQYFGYSLEKRIKPRFAIMKKSGVKLLLNQVLSLSSSNFDKALKKKMKKMQDG* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0713 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 Gene3D Transcription termination factor 3, mitochondrial 248 467 IPR038538 -
Vra1g0713 471 PANTHER CGI-12 PROTEIN-RELATED 23 469 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 23 469 - -
Vra1g0713 471 Pfam mTERF 183 336 IPR003690 GO:0003690|GO:0006355
Vra1g0713 471 Pfam mTERF 346 457 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0713 Vra-Chr1 8385876 8389412 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra1g0713 mTERF 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0713 K15032 K12177 gmx:100781900 780.015