Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0708 ATGGTGTTGGGATGGAGGAGGAGGAAGGGAAACAGCAAGCACAGCAAAGGTGGGAAACCTGTGATGATGGAGTTGGTGGTTCCGAACCACTTCAGGTGTCCGATTTCTCTTGACATGATGAAGGATCCTGTGACACTGTCAACTGGGATAACCTACGACAGGGAGAATGTGGAGAGGTGGTTTGAAGAAGGGAACATCACATGTCCGGTTACCAACCAGGTTGTGAGAAACTTTGACATGATTCCAAACCACTCTCTCAGGATGATGATCCAAGATTGGTGTGTGGAGAATAGGCAACATGGGGTGGAGAGGATTCCGACACCAAGAATACCAATCAGCCCAATTGAGGTTGCTGAGCTTCTGATGCAAGTGAAGAACTCGGCAAGGCGTTTGGACCAATACGGCTGTCTTGAATTGGTACAGAAAATGAAGAAATGGGGTGAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGAGAATGGAGCACCTGTGGCATTGGCTTCATCGTTTGATGCATTTGCCAATGACTCGGTGGAGAGAAACGTGGTGGTTCTTGAGGAGATTCTTGCAGCTCTGAATTGGATGTTTCCACTTCAACTTGAGGCACAGAAATCCTTGGGATCTTTGGCTTCTCTAAGGTGCATGGTATGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAGAGAGCTTCTTTCATTTGGTGATGTGCAGCATGTGGAGGCTTTGTCACAGATTGAAGGGGTGAATGAGCTCTTGGTGGAGTTCATCAACAAGAGGATCAGTCCAACCATCACAAAGGCCTCATTGAGGGTGGTTTGGTACATGGTCTCATCCTCTTCAAATTGCAGTGAGAAAATGAAATTGGCATTTGTAGAACTTGGTTTGGTTTCTTGTTTGCTTGACATTCTCATTGAGTCAGAGAAGAGCAGGTATGAGAAGGCTTTGGCCATTTTAGACTCTCTATTCAGCAGTGAAGAAGGAAGAAACAAAGGGTGTTGGAATGATCTAACAGTTCCTCTTTTGGTGAAGAGAATTCTGAGAGTTTCACCTTTGAGCACAGACTATTCTGTCTCTGCTCTTTGGAAGCTTTGCAAGTTTGGTGAAAAAGACGAAGGAAGAACTCTTCTTGAGGCCCTTCAAGTCGGTGCCTTTCAGAAGCTCTTGCTGGTTTTGCAAGTTGGTTGTGGTGATGAAACCAAGGAGAAAGCAACAGAACTTCTCAAGTTGATGAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1317 0.4518 MVLGWRRRKGNSKHSKGGKPVMMELVVPNHFRCPISLDMMKDPVTLSTGITYDRENVERWFEEGNITCPVTNQVVRNFDMIPNHSLRMMIQDWCVENRQHGVERIPTPRIPISPIEVAELLMQVKNSARRLDQYGCLELVQKMKKWGEESERNKRCIVENGAPVALASSFDAFANDSVERNVVVLEEILAALNWMFPLQLEAQKSLGSLASLRCMVWFLKHQDLSGKEKSIVALRELLSFGDVQHVEALSQIEGVNELLVEFINKRISPTITKASLRVVWYMVSSSSNCSEKMKLAFVELGLVSCLLDILIESEKSRYEKALAILDSLFSSEEGRNKGCWNDLTVPLLVKRILRVSPLSTDYSVSALWKLCKFGEKDEGRTLLEALQVGAFQKLLLVLQVGCGDETKEKATELLKLMNPYRAELECIDSDYKNVKRSF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0708 438 SUPERFAMILY ARM repeat 148 417 IPR016024 -
Vra1g0708 438 CDD RING-Ubox_PUB 31 73 IPR045210 -
Vra1g0708 438 SUPERFAMILY RING/U-box 26 103 - -
Vra1g0708 438 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Vra1g0708 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 438 - -
Vra1g0708 438 PANTHER WDSAM1 PROTEIN 18 438 IPR045185 GO:0061630
Vra1g0708 438 Gene3D - 117 417 IPR011989 -
Vra1g0708 438 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Vra1g0708 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 105 IPR013083 -
Vra1g0708 438 Pfam U-box domain 27 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0708 Vra-Chr1 8346151 8348166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0708 5 438 U-box Gene Family AT5G37490 42.921 8.18e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0708 - - gmx:100794340 766.533