Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0706 ATGGAATCTGAGAGGCCTAACACTACTATTGAGACCTACGAACACCAACACCAACTACAACAGCAAGATGATGACGAGGAAGAAGAAGAAGAAGAAAAGAACAATGAGATCCTCAAGAGAAGAATCTCCAGCCACCCTCTCTATGGACTGCTGGTTGAAGCTCACCTCGACTGTTTGAAGGTCGGTGACATTTCCAACCTGGAGAGAGAGCTGAAGATAGATCAGATGCAAGCAACAGAGAAGAAAAACTTGGGCATGTTCAGCCAATCTGAGCTCGATCTCTTCATGGAAGCATATTGCTTGGCACTTGGGAAGCTTAAAGAAGCAATGGTGGAACCACAACAGAAGTCCATGGCTTTCATAAACAACATGCATTCTCAACTTAGAGAGATCACTAACCCAACTTTGCCTGCACCTTCTTCTGAACCTTCACCACCTTCTGCTTCTTCTAGTCACTCCAAATTCTCAATAAATTAG 477 0.4403 MESERPNTTIETYEHQHQLQQQDDDEEEEEEEKNNEILKRRISSHPLYGLLVEAHLDCLKVGDISNLERELKIDQMQATEKKNLGMFSQSELDLFMEAYCLALGKLKEAMVEPQQKSMAFINNMHSQLREITNPTLPAPSSEPSPPSASSSHSKFSIN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0706 158 MobiDBLite consensus disorder prediction 1 36 - -
Vra1g0706 158 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 134 - -
Vra1g0706 158 MobiDBLite consensus disorder prediction 131 158 - -
Vra1g0706 158 MobiDBLite consensus disorder prediction 1 22 - -
Vra1g0706 158 SMART KNOX1_2 36 82 IPR005540 GO:0003677|GO:0005634
Vra1g0706 158 Coils Coil 10 39 - -
Vra1g0706 158 Pfam KNOX1 domain 38 62 IPR005540 GO:0003677|GO:0005634
Vra1g0706 158 PANTHER FUSED COMPOUND LEAF 1 16 134 - -
Vra1g0706 158 Pfam KNOX2 domain 90 132 IPR005541 GO:0003677|GO:0005634
Vra1g0706 158 SMART KNOX2_2 82 133 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0706 Vra-Chr1 8328343 8330707 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0706 36 128 Homeobox Transcription Factor Family AT4G08150 38.000 4.47e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0706 - - gmx:100790124 207.223