Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0704 ATGGCACTTGTCCGCCACCGTCGCCATCCTAATCTCCGCCTACCCCTCCCGGAGATCTCAGAGCGCCGCCCCCGCTTCCCGCTGCCCCTCCCTCCCACCACCGCTAAACCCGCCGCCGGAGAAGGCATCACCGCCGCCGACCTCGAAAACCTCGCCGTTCTCGGCCATGGCAACGGCGGCACCGTCTACAAGGTCCGCCACAAGACAACCTCCGCCACCTACGCGCTCAAAATCATCCACAGCAACGCCGACGCCACCATGCGCCGCCGTGCGTTCTCGGAAACCTCCATCCTCCGCCGTGCCACCGATTGCCCCCACGTCGTCCGCTTCCACGGCTCCTTCGAAAAGCCCTCCGGCGACGTCGCCATCCTCATGGAGTACATGGACGGCGGCACCCTCGAGACCGCCCTCGCCACCAGCGGCACGTTCTCAGAGGGAAGGCTTGCCGCGGTGGCGCGTGATATCCTCGAGGGCCTCGCGTGCCTCCACTCGCGCAACATCGCGCACCGCGACATCAAACCTGCGAACATCCTCGTAAACTCCCAGGGAGAAGTTAAAATTGCAGACTTCGGAGTCAGCAAACTCATGTGCCGCACGCTCGAAGCTTGCAACTCTTATGTCGGCACGTGCGCGTACATGAGTCCGGAACGGTTCGACCCGGAAGCATCAGGCGGGAACTACAACGGTTTCGCTGCGGATATTTGGAGTTTGGGTTTGACCCTCTTTGAACTCTACGTGGGTCACTTCCCCTTTCTTGAAACGGGTCAGCGACCCGATTGGGCTACCCTCATATGTGCCATTTGTTACGGCGACCCGCCTAGCCTCCCCGAGACGGCGTCAGCTGAATTTCGCAGCTTCGTCGAATCCTGTTTAAAAAAGGAGTCCAGTGATAGGTGGACGGCGGCACAACTCTTGACCCACCCGTTTGTGTGCAAAAACCCGGAAACTCACTAA 954 0.608 MALVRHRRHPNLRLPLPEISERRPRFPLPLPPTTAKPAAGEGITAADLENLAVLGHGNGGTVYKVRHKTTSATYALKIIHSNADATMRRRAFSETSILRRATDCPHVVRFHGSFEKPSGDVAILMEYMDGGTLETALATSGTFSEGRLAAVARDILEGLACLHSRNIAHRDIKPANILVNSQGEVKIADFGVSKLMCRTLEACNSYVGTCAYMSPERFDPEASGGNYNGFAADIWSLGLTLFELYVGHFPFLETGQRPDWATLICAICYGDPPSLPETASAEFRSFVESCLKKESSDRWTAAQLLTHPFVCKNPETH* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0704 317 CDD PKc_MAPKK_plant_like 46 310 - -
Vra1g0704 317 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 2 314 - -
Vra1g0704 317 Gene3D Transferase(Phosphotransferase) domain 1 124 317 - -
Vra1g0704 317 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Vra1g0704 317 SMART serkin_6 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0704 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vra1g0704 317 Pfam Protein kinase domain 50 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0704 317 SUPERFAMILY Protein kinase-like (PK-like) 47 312 IPR011009 -
Vra1g0704 317 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 314 - -
Vra1g0704 317 ProSiteProfiles Protein kinase domain profile. 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0704 317 Gene3D Phosphorylase Kinase; domain 1 39 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0704 Vra-Chr1 8311277 8312559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0704 1 310 MAP Kinase Kinase Gene Family AT1G73500 62.179 2.26e-129 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vra1g0704 Pkinase 4.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0704 K20604 - gmx:100804100 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0704 1 8311277 8312559 Vra1g0704 1 8311277 8312559 ECH