Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0692 ATGCCATTGATTCGCACTACTCCACCGATTCCTTGTGCCATTTCCACACTCACTACACTTACCAATGCACCTCTATCATCATCTTCCACTCTTTCTGCTGCCACATTCGGTTCCCACCTCCTGCGTAAAATTCAGAACCCAATTATTGGGTTTTCCGCAACCAGGAATCGCTCGCGTGCTGCGCTGATCAGAGCCAAAGCAGGGGCCGATTACTATTCCACCTTGAACGTTAGCCCCAGTGCTTCGCTGCAAGAAATCAAGGCCTCCTATCGCAAGCTGGCGCGCAAGTACCATCCAGATATGAATAAAAACCCTGGGGCTGAGGAGAAGTTCAAAGAAATAAGTGCTGCATATGAGGTCCTGTCAGATGACGAGAAAAGATCTTTATATGATCGTTTTGGTGAGTCAGGTCTCCAAGAAGAAAATGGAGGATCAAGTGGTGCTCCAGGGGTGGATCCTTTTGATTTATTTGATACATTCTTTGGTCGTTCTGATGGAATATTTAGAGATGGTGATGAAGGGGGCATCAACTTCAATTTTGGTTACAAGAGAAACCGAAGTCATGATATTCGATATGACCTTAATTTGAGCTTCGAAGAATCAATATTTGGAGCACGAAGGGAGATTGAAGTTTCCTGCTTTCAGACATGTGGCACTTGTGATGGTACAGGAGCCAAATCAAAGAATTGCATTAAGCAATGCACAAATTGCGGTGGCAGAGGGGGAGAAATGAAAAGTCAGAGAACACCCTTTGGAATGATGTCTCAGGTTTCTACCTGCTCTAAGTGTAGTGGCCTTGGTAAAATAATCACAGATCACTGTCGAAGGTGTGATGGCAGTGGTCAGGTGCAATCCAAAGAAACAATCGAAGTGGACATTCCTGCTGGAGTCAATGATGGAGACACAATGCAAATTCAAGGACAAGGGAATTTTGATAAAAAGAGGCAAATTACTGGGGATCTTTTTGTTGTCCTGCATGTAGATGAAAAGCAAGGAATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAACATTGACTTCACAGATGCAATATTGGGGTCAGTTAAAAAGGTTGAAACTGTTGAAGGTTTACGGGATCTTCAAATTCCTTCAGGGATTCAACCTGGAGATTCGGTGAAGTTGTCACGTTTGGGAGTTCCAGACATGAATAAACCATTTGTTCGAGGCAATCATTACTTCATTGTGAATGTTCTTATTCCAAAGGATATCAGTGGCACAGAACGTGTTCTTGTTGAGCAGTTAGCTTCACTAAGAGCTTCTAACAAAAGGGATTCACTGTCTTCGGGTGACAATGGAATACCTAAAGGAAAGTTCAATGAATTCACTAAGAGGAGGGATCCGAGGGGTGACGGTTCAAGCAAGGGAATAAAAAATGTTGACTCTCTATGGGGATCGATCAAGAACTTCTTAAGTGGAAGACAGTCCGATGAAAGGTTTGCTTCAATTAGCATGGATACACCAGCATTAATACGGAGATATGCTGACCGAAGTCCGTCTGTCCTTAATTTCTTTTTTGTTGCTTTTGTTGTAACTTGGACTTTTGCCTTGATAGCAAAGTCTAAGTACTCGATGCTTCAGAAAAGGTCTCAGTCCTTAAATAGAACACAGTGA 1635 0.4275 MPLIRTTPPIPCAISTLTTLTNAPLSSSSTLSAATFGSHLLRKIQNPIIGFSATRNRSRAALIRAKAGADYYSTLNVSPSASLQEIKASYRKLARKYHPDMNKNPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQEENGGSSGAPGVDPFDLFDTFFGRSDGIFRDGDEGGINFNFGYKRNRSHDIRYDLNLSFEESIFGARREIEVSCFQTCGTCDGTGAKSKNCIKQCTNCGGRGGEMKSQRTPFGMMSQVSTCSKCSGLGKIITDHCRRCDGSGQVQSKETIEVDIPAGVNDGDTMQIQGQGNFDKKRQITGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLQIPSGIQPGDSVKLSRLGVPDMNKPFVRGNHYFIVNVLIPKDISGTERVLVEQLASLRASNKRDSLSSGDNGIPKGKFNEFTKRRDPRGDGSSKGIKNVDSLWGSIKNFLSGRQSDERFASISMDTPALIRRYADRSPSVLNFFFVAFVVTWTFALIAKSKYSMLQKRSQSLNRTQ* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0692 544 Gene3D - 334 425 - -
Vra1g0692 544 SUPERFAMILY HSP40/DnaJ peptide-binding domain 335 415 IPR008971 GO:0006457|GO:0051082
Vra1g0692 544 CDD DnaJ_C 189 411 - -
Vra1g0692 544 CDD DnaJ_zf 217 281 IPR001305 GO:0031072|GO:0051082
Vra1g0692 544 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 327 IPR008971 GO:0006457|GO:0051082
Vra1g0692 544 MobiDBLite consensus disorder prediction 445 461 - -
Vra1g0692 544 SUPERFAMILY Chaperone J-domain 69 171 IPR036869 -
Vra1g0692 544 Gene3D DnaJ domain 67 170 IPR036869 -
Vra1g0692 544 MobiDBLite consensus disorder prediction 430 464 - -
Vra1g0692 544 Pfam DnaJ central domain 217 281 IPR001305 GO:0031072|GO:0051082
Vra1g0692 544 Pfam DnaJ C terminal domain 190 408 IPR002939 -
Vra1g0692 544 PRINTS DnaJ domain signature 72 90 IPR001623 -
Vra1g0692 544 PRINTS DnaJ domain signature 90 105 IPR001623 -
Vra1g0692 544 PRINTS DnaJ domain signature 106 126 IPR001623 -
Vra1g0692 544 PRINTS DnaJ domain signature 126 145 IPR001623 -
Vra1g0692 544 Gene3D - 188 323 - -
Vra1g0692 544 CDD DnaJ 70 123 IPR001623 -
Vra1g0692 544 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Vra1g0692 544 PANTHER EXPRESSED PROTEIN 77 431 - -
Vra1g0692 544 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 77 431 - -
Vra1g0692 544 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 204 284 IPR036410 -
Vra1g0692 544 SMART dnaj_3 69 126 IPR001623 -
Vra1g0692 544 ProSiteProfiles dnaJ domain profile. 70 134 IPR001623 -
Vra1g0692 544 Gene3D - 217 281 - -
Vra1g0692 544 Hamap Chaperone protein DnaJ [dnaJ]. 67 467 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vra1g0692 544 ProSiteProfiles Zinc finger CR-type profile. 204 286 IPR001305 GO:0031072|GO:0051082
Vra1g0692 544 Pfam DnaJ domain 70 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0692 Vra-Chr1 8136857 8146751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0692 71 131 C2H2 Transcription Factor Family AT1G74250 43.284 2.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0692 K03686 - gmx:100782135 873.618