Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0691 ATGCAACATTCTCACAAACTCTTTCCCACCATTCTCTTTATCTTATCCTTCTTTTCTTCAACACTCTCCGACCTCTCGTCGGAGCGCGCGGCGCTCCTCGCCCTGCGCTCCGCCGTGCGCGGCCGTACGCTCCTCTGGAACACCACCTTCCGCTCGCCTTGCGTCTGGCCCGGCGTCCAATGCGATGCCGCCAATGCCACTGTGGTGGAGCTTCACCTCCCTGCCGTCGCTCTCTCCGGCGAGCTTCCGGACGGTGTGTTCCCGGAGCTTCCCAACCTCCACACCCTCAGCCTCCGCGTCAACTCCCTCTCTGGCGCCCTCCCCGCTGACCTTGCTGCATGCACCGCCCTCCGCAACCTGTTCCTCCAACAGAACCACTTCGCCGGCGAGGTGCCGGCGTTTCTCTCCGGCATGACTGGCCTCGTCCGGCTCAATTTGGCCTCCAACAACTTTTCCGGCCCATTTCCGGCCCGGTTCGGGAACCTCACCCGGTTGAGGACCCTTTTCCTTGAGAATAATCGGCTCACTGGTTCGTTACCCGGTTTGGAAGAACTCGGTGAATTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCTGTTCCAAAAAAGTTGCAGACTTTTGATAAAGATTCGTTTTTGGGCAATACCCTTTGTGGGAAGCCACTTGGGATTTGTCCCTGGGATCATGGGGGTGGCGAGAATGGTGTAAATGGGAGTTCAAATTCAAGTGGGGTTGGAGGAGGAGAAGGGGGTGTGATTGGAGGGGAAAAGAAGAAGGGGAAGCTTTCTGGGGGTGCAATTGCAGGGATTGTTGTTGGGTGCGTGGTGGCTCTTTTGTTGGTTCTCTTTGCTTTGATTATTTTATGTAGAAGTGGAAACAAGACTAGGAGTGTTGATAATGTTAGCAACGTGGTGGGATTGAAGGAGGAGCCTCAACAGCATGGGGAGGTGGGAATTGAGGGTGGTAATGTGGAGAGTGGTGGTGGTGGTGGTGGGGATTCGGTGGCCGCAGCGGCGGCAGCGGCGGCGGCAGTGGCGGCAGTGGGTGGGAATGGAGTTGGCGGTGGAAGTGGTGGAGATAAGAAGTTGGTGTTTTATGGGAATAAAGTGAAGGTGTTTGATTTGGAGGATTTGCTAAGGGCTTCTGCAGAGGTGTTGGGAAAAGGAACTTTTGGGACCACCTATAAGGCTGTTTTAGAGGATGGGCCTGTGGTGGCTGTGAAGAGGCTGAGGGATGTGACGGTTTCGGAGAAGGAGTTTAAGGAGAAGATTGATGGGGTGGGAGTGATGGATCATGAGAATTTGGTACCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACATGCCAATGGGAAGCCTATCTGCAATTCTGCATGGAAACAAAGGAGCTGGTAGGACACCGTTGAATTGGGAAATGAGATCAGACATTGCATTAGGAGCTGCTCGTGGCATCGAGTACCTACATTCACAAGGGCCTAGTGTTTCTCATGGAAACATAAAGTCCTCCAACATCCTCCTAAGCAAATCCTATGATGCCAGGGTGTCTGATTTTGGGCTTGCACACCTTGTTGGCCCCTCATCCACACCGAACAGGGTGGCCGGCTACCGTGCCCCCGAAGTAACCGATCCACGGCGAGTTTCTCAGAAGGCTGATGTATACAGCTTTGGAGTGTTGCTCTTGGAACTTCTGACTGGAAAAGCTCCTACTCATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCGAGATGGGTCCAATCAGTGGTTAGAGAGGAATGGAGTTCAGAGGTGTTTGATATTGAACTCCTTAGGTATCAGAATTCTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTGGATTGTGTAGTTCCATACCCTGCAAACCGCCCTTCAATGTCTCAAGTGAGACAACGCATGGAAGAGTTTCATAGGTCTAGTAGTACCATGAAAGAGGGTACTCAAGACCAAATCCATCAACCTGATTTGATCGATGATATAGAAGATGTGTCATCTAGATGA 2046 0.5176 MQHSHKLFPTILFILSFFSSTLSDLSSERAALLALRSAVRGRTLLWNTTFRSPCVWPGVQCDAANATVVELHLPAVALSGELPDGVFPELPNLHTLSLRVNSLSGALPADLAACTALRNLFLQQNHFAGEVPAFLSGMTGLVRLNLASNNFSGPFPARFGNLTRLRTLFLENNRLTGSLPGLEELGELAQFNVSYNMLNGSVPKKLQTFDKDSFLGNTLCGKPLGICPWDHGGGENGVNGSSNSSGVGGGEGGVIGGEKKKGKLSGGAIAGIVVGCVVALLLVLFALIILCRSGNKTRSVDNVSNVVGLKEEPQQHGEVGIEGGNVESGGGGGGDSVAAAAAAAAAVAAVGGNGVGGGSGGDKKLVFYGNKVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEDGPVVAVKRLRDVTVSEKEFKEKIDGVGVMDHENLVPLRAYYYSRDEKLLVHDYMPMGSLSAILHGNKGAGRTPLNWEMRSDIALGAARGIEYLHSQGPSVSHGNIKSSNILLSKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWSSEVFDIELLRYQNSEEEMVQLLQLAVDCVVPYPANRPSMSQVRQRMEEFHRSSSTMKEGTQDQIHQPDLIDDIEDVSSR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0691 681 Pfam Protein kinase domain 385 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0691 681 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Vra1g0691 681 Gene3D Phosphorylase Kinase; domain 1 361 456 - -
Vra1g0691 681 MobiDBLite consensus disorder prediction 651 681 - -
Vra1g0691 681 SUPERFAMILY Protein kinase-like (PK-like) 386 648 IPR011009 -
Vra1g0691 681 CDD STKc_IRAK 388 651 - -
Vra1g0691 681 Gene3D Transferase(Phosphotransferase) domain 1 457 675 - -
Vra1g0691 681 PANTHER OS05G0588300 PROTEIN 2 681 - -
Vra1g0691 681 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 681 - -
Vra1g0691 681 SUPERFAMILY L domain-like 42 208 - -
Vra1g0691 681 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vra1g0691 681 MobiDBLite consensus disorder prediction 666 681 - -
Vra1g0691 681 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Vra1g0691 681 ProSiteProfiles Protein kinase domain profile. 382 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0691 681 Gene3D Ribonuclease Inhibitor 136 227 IPR032675 -
Vra1g0691 681 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0691 Vra-Chr1 8127512 8130668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0691 24 670 Receptor kinase-like Gene Family AT1G48480 58.015 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra1g0691 Pkinase 1.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0691 - - gmx:100781597 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0691 1 8127512 8130668 Vra1g0691 1 8127512 8130668 ECH
Vra1g0366 1 4872468 4875562 Vra1g0691 1 8127512 8130668 PCT