Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0688 ATGGAGAGAGAATATTTTGACTTGAGTTCCAAAAACATGAAAGATGATGCTGCTAACAAACCAAAAGACCCAGCTAGGAGTTCAGGAATGCAGTGGTCATTCCCAAACAAGGTTTCAGTCCTTCCTCAGTTCCTGTCCTTCAAGACCAATCAGGAAGACAGGCCTAGAAAGACTATTCTTGATTCACTAGCTTCATCTGGATATATGAACATGCCATCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGGCTCAGAGAAATTTATCCATAGGCAAGCATAGTGCAGGAAACAAACAGGGAAGGACAGTTTATCCAATGCAATATATTGATGCACAATCTGCATGCCTTCAGGAGGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGCTCTTCAATCTAATCTTGCTACAACCGGATTGAACATGGCCAATTCAGTCATAAAACCAGAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCTATAGGTTCCATTGTTGGATCCACTGACTTAAGGAATAGTTCCAAATCCTCTGGCATGGCTACACAGCTCACCATTTTCTATTCTGGTTCCGTATGTGTTTATAACGACATAACTCCTGAGAAGGCCAAGGATATAATGTTAATGGCTGGAAATGGGTCTACTCCAACTCAGAAAATGGCAGTTTCCACAGCTAAATTGCAGACAGCAGTTTCTATTCCCTCCAAAGATGATGGTTTCATTATGAGCCAATCATATTCTCCCTTACCCCTCCCAACCTCTCTCTCATTGACCTCTCATATCAATTCTCAGCCGGGAGCAGGCACTTCTAGCTACAATAATCTTGCAATAATAAGACCAATAGTAGGATCTTCAATTGCCCCTACTAACCATTTGGAGTCACCTATTATTGTTGGTTCTGTAGGATCTGCATCTAAGGAAAGTGCTCAACCAGTATACTTGCCTCAGGCACGCAAAGCATCCTTGACTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGACGAGTATATCACCATACTTTTATATGAGCAAGAAATCATCTGAAAGCAGCTCATCTGGATCAGACAGTGTTAGTTTCTCCTTTAACTTCTCTGGATCCTGTTCTCTACCAGCCACCAACTAG 1161 0.4186 MEREYFDLSSKNMKDDAANKPKDPARSSGMQWSFPNKVSVLPQFLSFKTNQEDRPRKTILDSLASSGYMNMPSKEAFESNQKPFLGVAQRNLSIGKHSAGNKQGRTVYPMQYIDAQSACLQEARIFSVSNQSNQVSPALQSNLATTGLNMANSVIKPEPLGSKSSGTPLSVLPSIGSIVGSTDLRNSSKSSGMATQLTIFYSGSVCVYNDITPEKAKDIMLMAGNGSTPTQKMAVSTAKLQTAVSIPSKDDGFIMSQSYSPLPLPTSLSLTSHINSQPGAGTSSYNNLAIIRPIVGSSIAPTNHLESPIIVGSVGSASKESAQPVYLPQARKASLTRFLEKRKERMTSISPYFYMSKKSSESSSSGSDSVSFSFNFSGSCSLPATN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0688 386 SMART tify_2 190 225 IPR010399 -
Vra1g0688 386 MobiDBLite consensus disorder prediction 1 31 - -
Vra1g0688 386 MobiDBLite consensus disorder prediction 1 22 - -
Vra1g0688 386 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 30 258 IPR040390 -
Vra1g0688 386 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 263 386 IPR040390 -
Vra1g0688 386 ProSiteProfiles Tify domain profile. 190 225 IPR010399 -
Vra1g0688 386 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 263 386 - -
Vra1g0688 386 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 30 258 - -
Vra1g0688 386 MobiDBLite consensus disorder prediction 357 386 - -
Vra1g0688 386 Pfam tify domain 194 224 IPR010399 -
Vra1g0688 386 Pfam Jas motif 328 352 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0688 Vra-Chr1 8085845 8089343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0688 30 370 Tify Gene Family AT3G17860 37.778 1.58e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra1g0688 tify 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0688 K13464 - gmx:100807288 533.872