Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0675 ATGGAGGAATTGGATTCAATACCAAAGACTCTGATGGAAAATCTGCTTGGTCTTTTGAGGGTTCGCGTGAAGCGTGGTATCAACCTTGCCGTTCGTGATGTCCGAAGTAGCGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACTCGTGTCATTAAAAAGGATGTAAATCCGGAGTGGAATGAAGACCTTACACTTTCTATTATAGATCCGAATCACCAAGTTAAACTGACTGTGTATGATCATGACACCTTCAGCAAAGATGACAGAATGGGAGATGCAGAATTTGACATCTTTCCCTTTATAGAAGCCTTGAAGAGCAACTTAACTGGCATTCCAAATGGTACTGTAATAAAAAGAATACAACCAAGCAGGGAGAACTTCCTGGCTGATGAAAGCTGCATCACTTATTCCAATGGCAAGGTTGTTCAAGATATGATCCTTAGATTGCAGAATGTGGAATGTGGTGAAGTGGAAATTCAGTTGCAATGGATTGATCTTCCTGGTGCTAAGGGTATAGCTAAGGGTACATGA 543 0.4088 MEELDSIPKTLMENLLGLLRVRVKRGINLAVRDVRSSDPYVVIKMFNQKLKTRVIKKDVNPEWNEDLTLSIIDPNHQVKLTVYDHDTFSKDDRMGDAEFDIFPFIEALKSNLTGIPNGTVIKRIQPSRENFLADESCITYSNGKVVQDMILRLQNVECGEVEIQLQWIDLPGAKGIAKGT* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0675 180 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 8 175 - -
Vra1g0675 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 8 175 IPR044562 -
Vra1g0675 180 Gene3D C2 domain 13 175 IPR035892 -
Vra1g0675 180 CDD C2_ArfGAP 16 159 - -
Vra1g0675 180 SMART C2_3c 18 113 IPR000008 -
Vra1g0675 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 102 IPR035892 -
Vra1g0675 180 Pfam C2 domain 17 101 IPR000008 -
Vra1g0675 180 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0675 Vra-Chr1 7958259 7960640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0675 49 178 C2H2 Transcription Factor Family AT1G70790 59.848 1.05e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0675 - - gmx:100810504 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0675 1 7958259 7960640 Vra1g0675 1 7958259 7960640 ECH
Vra1g0351 1 4772556 4773492 Vra1g0675 1 7958259 7960640 PCT