Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0672 ATGGATCGTAACAAAAAGGGAACAGGGGAGGCAGAGTTTTTTACTGAGTATGGAGAGGCAAGTAGGTATGACATCCTAGAAGTGATTGGAAAAGGGAGTTACGGTGTTGTGTGTTCTGCTGTTGACAGTCATAATGGGGAAAAAGTTGCAATAAAGAAAATCAATGATGTTTTTGAGCATGTGTCTGATGCCACACGGATCCTAAGAGAAATAAAACTCCTTCGTTTGCTTCGACATCCTGATATAGTTGAGATAAAGCACATAATGCTTCCTCCCTCACGACGAGAGTTCAGGGATGTCTATGTTGTGTTTGAGTTGATGGAGTCTGACCTTCATCAAGTGATTAAGGCAAACGATGATCTTAGCCCTGAGCACTATCAATTTTTCTTGTACCAACTTCTTAGAGGCCTCAAATTTATACACACAGCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTAGCTAACGCTGATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCTCCATCAGCTATATTCTGGACAGACTATGTTGCAACCCGGTGGTATCGTGCACCTGAACTATGCGGCTCTTTTTTCTCAAAATATACTCCCGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCAGGAAAAAATGTAGTGCACCAATTGGATCTCATAACAGACCTGCTTGGCACTCCTCCTACTGAAACCATTTCTAAGATTCGAAATGAGAAGGCTAGAAGGTACCTTGGTAGCATGAGGAAAAAACAACCTATTCCATTCACCAAAAAATTTCCAAATGTAGATCCTTTGGGCCTTCGTTTGCTGGAGCGATTACTTGCATTTGATCCTAAAGATCGTCCAGCAGCTGAAGAGGCACTAAGTGACCCTTATTTCAATGGTTTGGCAAATGTGGACCGTGAACCATCCACTCAACCTATTTCAAAGCTGGAGTTTGAGTTTGAGAGGAGAAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTAGAGTATCATCCCCAGATGCTCCAAGAATATCTTCGCGGTGGAGAACAAACTAGCTTCATGTATCCAAGTGGGGTTGATCGATTCAAGCGACAGTTTGCTCATCTTGAGGAGCATTCTGGCAAAGGTGAACGAGGCACTCCATTGTTGAGGCACCATGCCTCCTTGCCTAGAGAGCGAGTTCCAGCTCCCAAGGATGAAAATAATCAAAATGATGATGGTGAAAATCCAACTGCAGCAGTTGATGAGACAGATTCTGGAAATCCAGATGCACAAAACGGACACTCCAAGCCAAACTGCAGTGCACGTAGCCTGTTGAAGAGTGCCAGCATTAGTGGTTCAAAGTGTATAGATGTGAAAAAAAGTAATGATCAAGAGGAGGAGCCACTTACAGAGGTGAGTGATGAGACTCTGGATGAGTTGACAAAGGTTGCTTCCCTGCATACTTGA 1512 0.4226 MDRNKKGTGEAEFFTEYGEASRYDILEVIGKGSYGVVCSAVDSHNGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDVYVVFELMESDLHQVIKANDDLSPEHYQFFLYQLLRGLKFIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNEAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLLGTPPTETISKIRNEKARRYLGSMRKKQPIPFTKKFPNVDPLGLRLLERLLAFDPKDRPAAEEALSDPYFNGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGEQTSFMYPSGVDRFKRQFAHLEEHSGKGERGTPLLRHHASLPRERVPAPKDENNQNDDGENPTAAVDETDSGNPDAQNGHSKPNCSARSLLKSASISGSKCIDVKKSNDQEEEPLTEVSDETLDELTKVASLHT* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0672 503 Pfam Protein kinase domain 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0672 503 MobiDBLite consensus disorder prediction 408 426 - -
Vra1g0672 503 ProSitePatterns MAP kinase signature. 58 161 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vra1g0672 503 CDD STKc_TDY_MAPK 22 359 - -
Vra1g0672 503 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524
Vra1g0672 503 SUPERFAMILY Protein kinase-like (PK-like) 19 319 IPR011009 -
Vra1g0672 503 MobiDBLite consensus disorder prediction 408 459 - -
Vra1g0672 503 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 8 448 - -
Vra1g0672 503 ProSiteProfiles Protein kinase domain profile. 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0672 503 MobiDBLite consensus disorder prediction 427 459 - -
Vra1g0672 503 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 448 - -
Vra1g0672 503 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Vra1g0672 503 MobiDBLite consensus disorder prediction 472 491 - -
Vra1g0672 503 SMART serkin_6 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0672 503 Gene3D Phosphorylase Kinase; domain 1 38 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0672 Vra-Chr1 7921348 7926647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0672 10 503 MAP Kinase Gene Family AT3G18040 82.143 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra1g0672 Pkinase 3.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0672 - - gmx:100776784 891.338