Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0669 ATGAAGAACCTTCTTAAGAAGCTTCATATCATGTCTAACCGATCAGAGAACAAACAAGGGTCTTCTTCATCCAAGGGGAGCAAGTCCAATCTTGGTTCATCTTCATCTTCCAAGAAGATTTTGCGCTCAAAGTCCACTCAAAGTTCTGAGCAAAAGCCCTTATCTGGGCTCTCCAGTTGGCTGCATTCAGTTGCCAATAGGCAGAGTCCTAGTCCTCCTCCATCTTTGAGCCAGGCAAGTGGCGAGAGAATGGAGCCATCTGATGCAGTGAGCAGTGGTGGTTTGGATGTTGTGTCAGATTCAGCTAGGCTTGATTCAGCGTCTAGTGCTTCCAGGGATCCTGAAGTGGAGGAAGAGTATCAGATACAACTCGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGGTTATTCACCAGCTGAAGTTGTGGCCTACCGGTATTGGAATTACAATGCTCTTGGTTACGATGACAAGATCTTGGATGGTTTCTACGATCTGTATGGGAACTTAACTGAGTCAAACCCTACAAGAATGCCTTCCTTTGTAGATTTGCAACTTCAAGGAACATCAATCTCAGGTAGTGGTACGTGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCAAACTTGTTGAAACTTGTGCAAAAGGCCCAGGAGTTGACGGGCAAATCAAGTTCAGATTTTGAAGTTATAGACAGCAATTTGGTTCGCAAGCTTGCAATATTTGTGGCTGACTATATGGGTGGACAAGTTGGAGATCCTGAAAGTATGAAAAGAGCATGGAGGAGTCTTAGTTACAGTCTCAAAGCAACCCTTGGTAGCATGTTTTTGCCACTTGGTTCTCTAACTATTGGATTGTCTCGGCATCGTGCATTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTGAAGGGGCTGCAATATACAAATTCCGATGATGTGGCAATAAACTTTGTCAAGATTGATGACGGAAGGGAGTACATTGTTGATCTAATGGCGGATCCTGGAACTCTTATTCCATCTGATGCAACTGGATCACAGGTAGAGTGCGATGAATCGTCGTATGTGGCCAGTCCTTCATCTAGAGACCTTGATTCCTCACATGTAGCATCATCCAGCAGTGGTGTTGGAAGTTCATACGAAGAAACTTTGGATTTGGGGATGTTGGACAAAGCAAACAGATCAAAACATTTTACTCATACAGGTAAAGAATCTGATGTAAGCATGCCCTCCACAGTAAAGGAAGAATCAATGCAACCCTTGAATGAATTTAAAAGCCCTCACAATGTTGAGAAGATCGCTGAGCAGGAAGCTCATGGCAGACCTAATCATCCACATGTACATGCAAGATCTCCATCTTGGACTGAAGGGATCAGTTCTCCCGCAGTACGTAGGATGAAAGTCAAAGATGTTTCTCTATACATGATTGATGCTGCAAAGGAGAATCCTCACTTAGCGCAGAGACTTCATGATGTTTTACTTGAAAGTGGTGTGGTTGCTCCTCCAAATCTATTTTCTGAAATTTGTGATGATGACTCAAGTTCCTCAACTGAGGCCAACTTTCCAACAGAAGAAAAAGATGAACATAAGCCGGGAAGTGGACATAAAGAAGCCGAACTTGATGGTAATCTTTTTCAAGCTCGAATTTTGCCTCCTTTGGCTCAAAATAGAGTCCAGAACAAAACAAGTTCTAGTGGTCAGGTGGAGCATTCTAAACCTGTAGAAGGTTTAGGAATCAACCTTCCTCTTTATACAAGGGAACCAGCTGTACAGCATGTACAACCTCAGGTAAAATATGGTCAAAATGTACCTGTTGCTGCTGCTGCAGCTGCCGCCGCCGCTGTTGTTGCATCTTCTATGGTAGCTGCGGTGGCAAAATCTAGCATTGACTCAAACATAGATCTCCCAGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTAGTAGCAACCACTGCTGCTGTCAGTAAACAGTATGAGCAAGGCAGTCGAAGCGATGGAGATACAGACAGTGCTGGTTATGACCTGAAGGGTAGCGGTGATGGAGAACATATAGCATTAGGAGCAAATTCAGAAGGCGAGCGAAGATCTGATAGATCAGTAGTAAGTAATGATAGCAACAAATCTGATTCCGCATTAGATGATCATGATGTTGCTGAGGTTGACATTCCATGGGAGGAAATCTCACTCGGGGAGCGTATTGGACTTGGATCGTATGGGGAGGTGTATCGTGGTGAATGGCGTGGAACAGAAGTTGCTGTAAAGAGGTTTCTAGATCAAGATATATCTGGTGAATCACTTGAAGAGTTCAAAACTGAAGTCAAAATAATGAAAAGATTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTGACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTACTTCATAGACCAAACAGTCAGCTAGATGAGCGAAGGCGTTTGAAGATGGCTATTGATGCTGCTCGAGGAATGAACTATTTGCACAACTGCACTCCAGTGATAGTGCATCGGGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTGAAGGTATGTGATTTTGGCTTATCACGAATGAAACATAGTACGTTCCTTTCTTCCAGATCAACTGCTGGAACAGCTGAGTGGATGGCTCCTGAGGTGTTGAGAAATGAACCTTCAAATGAGAAGTGTGATGTATATAGCTTTGGGGTCATATTATGGGAGCTCTCTACTCTGCAGCAACCCTGGGGTGGAATGAATCCAATGCAAGTTGTTGGTGCTGTAGGTTTCCAGCATCGCCGTCTTGACATTCCTGATAATGTGGACCCTACCATAGCAGATATTATCAGGAAATGCTGGCAAACAGATCCAAAGTTGAGACCTTCATTTGTTGAAATATTGGCGGCTCTGAAGCCATTACAGAAGACAGTGATTGGTTCTCAAGTGCCTAGACCAAGTGCATCAGGGAAGCATGAGAAGGGTCAGTCATCGCGTGTTACAGAAGACCCAGCAAGATAG 3114 0.4409 MKNLLKKLHIMSNRSENKQGSSSSKGSKSNLGSSSSSKKILRSKSTQSSEQKPLSGLSSWLHSVANRQSPSPPPSLSQASGERMEPSDAVSSGGLDVVSDSARLDSASSASRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPGYSPAEVVAYRYWNYNALGYDDKILDGFYDLYGNLTESNPTRMPSFVDLQLQGTSISGSGTWEAVLVNRAADSNLLKLVQKAQELTGKSSSDFEVIDSNLVRKLAIFVADYMGGQVGDPESMKRAWRSLSYSLKATLGSMFLPLGSLTIGLSRHRALLFKVLADSLGIPCRLVKGLQYTNSDDVAINFVKIDDGREYIVDLMADPGTLIPSDATGSQVECDESSYVASPSSRDLDSSHVASSSSGVGSSYEETLDLGMLDKANRSKHFTHTGKESDVSMPSTVKEESMQPLNEFKSPHNVEKIAEQEAHGRPNHPHVHARSPSWTEGISSPAVRRMKVKDVSLYMIDAAKENPHLAQRLHDVLLESGVVAPPNLFSEICDDDSSSSTEANFPTEEKDEHKPGSGHKEAELDGNLFQARILPPLAQNRVQNKTSSSGQVEHSKPVEGLGINLPLYTREPAVQHVQPQVKYGQNVPVAAAAAAAAAVVASSMVAAVAKSSIDSNIDLPVAAAATATAAAVVATTAAVSKQYEQGSRSDGDTDSAGYDLKGSGDGEHIALGANSEGERRSDRSVVSNDSNKSDSALDDHDVAEVDIPWEEISLGERIGLGSYGEVYRGEWRGTEVAVKRFLDQDISGESLEEFKTEVKIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNSQLDERRRLKMAIDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDNVDPTIADIIRKCWQTDPKLRPSFVEILAALKPLQKTVIGSQVPRPSASGKHEKGQSSRVTEDPAR* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0669 1037 MobiDBLite consensus disorder prediction 529 560 - -
Vra1g0669 1037 MobiDBLite consensus disorder prediction 14 85 - -
Vra1g0669 1037 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 1035 - -
Vra1g0669 1037 Pfam Protein tyrosine and serine/threonine kinase 751 1001 IPR001245 GO:0004672|GO:0006468
Vra1g0669 1037 SUPERFAMILY Protein kinase-like (PK-like) 737 1001 IPR011009 -
Vra1g0669 1037 SMART serkin_6 750 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0669 1037 MobiDBLite consensus disorder prediction 459 478 - -
Vra1g0669 1037 Pfam Ethylene-responsive protein kinase Le-CTR1 157 361 - -
Vra1g0669 1037 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 1035 - -
Vra1g0669 1037 MobiDBLite consensus disorder prediction 710 737 - -
Vra1g0669 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 869 881 IPR008271 GO:0004672|GO:0006468
Vra1g0669 1037 ProSiteProfiles Protein kinase domain profile. 750 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0669 1037 MobiDBLite consensus disorder prediction 1 118 - -
Vra1g0669 1037 MobiDBLite consensus disorder prediction 679 737 - -
Vra1g0669 1037 MobiDBLite consensus disorder prediction 379 401 - -
Vra1g0669 1037 Gene3D Phosphorylase Kinase; domain 1 743 827 - -
Vra1g0669 1037 MobiDBLite consensus disorder prediction 1011 1037 - -
Vra1g0669 1037 MobiDBLite consensus disorder prediction 543 559 - -
Vra1g0669 1037 CDD STKc_MAP3K-like 756 1002 - -
Vra1g0669 1037 PRINTS Tyrosine kinase catalytic domain signature 824 837 IPR001245 GO:0004672|GO:0006468
Vra1g0669 1037 PRINTS Tyrosine kinase catalytic domain signature 863 881 IPR001245 GO:0004672|GO:0006468
Vra1g0669 1037 PRINTS Tyrosine kinase catalytic domain signature 910 920 IPR001245 GO:0004672|GO:0006468
Vra1g0669 1037 PRINTS Tyrosine kinase catalytic domain signature 929 951 IPR001245 GO:0004672|GO:0006468
Vra1g0669 1037 PRINTS Tyrosine kinase catalytic domain signature 973 995 IPR001245 GO:0004672|GO:0006468
Vra1g0669 1037 Gene3D Transferase(Phosphotransferase) domain 1 829 1013 - -
Vra1g0669 1037 ProSitePatterns Protein kinases ATP-binding region signature. 756 777 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0669 Vra-Chr1 7876250 7886695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0669 1 1020 MAP Kinase Kinase Kinase AT1G73660 62.257 0.0 1142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vra1g0669 PK_Tyr_Ser-Thr 7.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0669 - - vra:106769971 1882.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0337 1 4683757 4689830 Vra1g0669 1 7876250 7886695 PCT