Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0663 ATGTGGATGGTTGGTGACAATGAAGGTGGTGAGTTCAGTATGGTTGATCATTCTTTCAGTGGAAGGAAACTCAGGCCCCTCATGCCAAGGCCAATGATTTCTTCTAACACTGCACCACCAACAACCACTCTTAGCTTAACTCACCACCATGGCAATGATTTCCCTTCACAATATGATCATCACCATCTTGCCTCAGTGGCAGAACAAAACAAGAGAGAGCAGTTCAATGGTGCAGCACCTGTTGTTGTGAGCTCAAGGTGGAATCCAACCCGAGAGCAACTAAGAGCCCTTGAAGAGTTGTATAGAAGAGGAACAAGGACACCATCTGCTGAGCAAATCCAACATATCACTGCACAGCTTAGAAGGTTTGGTAACATCGAAGGCAAGAATGTGTTCTATTGGTTTCAAAATCACAAAGCCAGGGAAAGGCAAAAACGTCGCCGTCAAATGGAATCAGAGGCTGAAACTCCTGAGAAGAAAGAGTCAACTGCAAGTAGGGCAGTTTTTGAAGTTAAACAGACCAAGAATTGGACACCCTCAACAAACTGCAGTACTGTTGCAGAGGAATCTGATTCAACACAGAGGACTGCAAAAGCAGTGGCCGTAGAGAGTAGAACAGTTGGATGGCTCCAATTCGATGAAGGGGAATTACAAGAAAGAAGAAACCTTTTGGAGAGGAATGCCACGTGGCATGTGATGCAGTTACCTTGTCCTTCTCCTGCTGCACCTGTCACAAGCCTCATAAACAGCCCTCCTAACGCCTCTTCAGCTATTAGTATGGCTACTACAACAACTACAGTAACAACAAAAATGGACCCTAACCTCATAAAGACACATGATCTCAGCTTTTACATTTCACCCCAGAGGGAAAACAGTGTTATATACTTAAGCAGTAGCAGTAGTACTAGTGAAGATGATAACTGTGTGGAGTCTCAAACCCTTCAGTTTTTCCCATTAAGGAGTGGTGGTGATGTTAGCAGTGACAACATGAGGGATAAAGAGACAGAGATATCAGCTTCAGCAATGAATTGCAATAACTTTACCCCAAGCCAGTTTTTTGAGTTTCTTCCTATGAAGGAGTAA 1083 0.4386 MWMVGDNEGGEFSMVDHSFSGRKLRPLMPRPMISSNTAPPTTTLSLTHHHGNDFPSQYDHHHLASVAEQNKREQFNGAAPVVVSSRWNPTREQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKRRRQMESEAETPEKKESTASRAVFEVKQTKNWTPSTNCSTVAEESDSTQRTAKAVAVESRTVGWLQFDEGELQERRNLLERNATWHVMQLPCPSPAAPVTSLINSPPNASSAISMATTTTTVTTKMDPNLIKTHDLSFYISPQRENSVIYLSSSSSTSEDDNCVESQTLQFFPLRSGGDVSSDNMRDKETEISASAMNCNNFTPSQFFEFLPMKE* 361
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0663 360 Pfam Homeodomain 85 144 IPR001356 GO:0003677
Vra1g0663 360 MobiDBLite consensus disorder prediction 142 164 - -
Vra1g0663 360 SMART HOX_1 82 149 IPR001356 GO:0003677
Vra1g0663 360 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 40 359 - -
Vra1g0663 360 ProSiteProfiles 'Homeobox' domain profile. 90 145 IPR001356 GO:0003677
Vra1g0663 360 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 40 359 IPR044555 GO:0003700|GO:0099402
Vra1g0663 360 SUPERFAMILY Homeodomain-like 85 147 IPR009057 -
Vra1g0663 360 MobiDBLite consensus disorder prediction 146 164 - -
Vra1g0663 360 CDD homeodomain 86 146 IPR001356 GO:0003677
Vra1g0663 360 Gene3D - 83 145 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra1g0663 Vra-Chr1 7831093 7834384 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0663 1 359 Wox Gene Family AT3G18010 40.609 2.71e-64 206
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra1g0663 Homeodomain 2.4e-19 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0663 - - gmx:100819541 547.74