Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0661 ATGACGCCTCGCGTCGACGATTTCGAAAACGACCATCTCTCCTCCACCGACGACGATGATGACGACGGCTTCGAGGAGGATTTGTCCGCGCTCTCACGAGCCTGCATGATCGCCGTCCCTGGCGCCGATGATAATTTCGCAGCTGAAGACGATGTTCCATCTTTGGACCCTCTCACTGACGCCGGCACTACCATTGTTCCCGTCGCCACCGACTCGGACTCCGACGACCACGACGACCTTGAATGTCTTAAGAGAGTGCAGAGTCTATACCAGCCTCTGTCCGTTCTTCCGCCACTTGAGCCGGCGGTGGTCGTGTCTGACGACGACGATGGCGTGGATGACCTCGAGACCGTGCGCGCCATTATGAAAAGGTTTGGCGACTACAGCGAAGGTTTGCATGAAGGTGGGATAAAAAAGTTGGTTGCGGAGGATCAAATCTCCAGCTTGGGCTGTGAGAGTGACATCGCTAATGGCTCAACCCATTACGAACCAGATGGTGGTGAATTATGTCCTTTTTCTCAAAATCCTATGGAGGCTGCCACACAGGAGTTGATTGAAAACATTGAAATGCTGCTTAGTGATTTTGTTGAGAGTTCTGAACCTGATGCCCTGGAGTCATCTAGATTACAACAGATAAGATTGAGCTTTCCTCCTGTTGTTCGGTGTTTGGTTGACGCCATTAGGAAAAATAGGGATTTAAAGAGATTTCTTGAACGTAAGAAGATTGAGATTGAGGCTAAAACTGAGGAAAACAAAAAGATAAGGAATAATATTAAACTTCTTAAGGGCCTCCAGGCTGCATGCACTAGAAGTACAGGGAACGTGTTATCACTGAAAAAAGATCCACTTGTTCAATTAATATCAGCAAAAAGGTCTCCAAAGAAGTCTAAGAAACGTAGAAAGGTAACTTCAATATGTTATGGCCCAGAAGAAAATTCTCGTGTTGCTAATTATAGGATGGTATTGGAAAGATTTCCACTTTCATTGGAAAGGAAAAAATGGTCTAAGGCAGACAGTGGAAATCTTTTTAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAACTCTCACTTTCACTTGATGGAACAAGTTCAGAGGGCTTGCGTGGAAATGCTGTTGACATGGATAATATAATTGCATCTATTGAGGATCTCGAAGTCACACCAGAGATGATTAGAAATTTTTTGCCTAAAGTTAATTGGGATCTCATAGCTTCTATGTATGTTGGTGGCCATACTGGTTCTGAATGTGAATCAAGGTGGTTGAATTATGAAGATCCTTTGGTCAACCAAGGTGCATGGACTAAGGAAGAGGACAAGTCCCTTTTACTTATTGTCCAAGATATGGGCATCAGGAACTGGTTCAATATAGCTTCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTATGTTCTGCAGTGACATATTTTGGTGATAGCAATTGGCAGTGCGTGGCTTCTGTTCTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCTCTCTGTCCGGAGAAGAAAGGGAGCTTTACACAAGAGGAAGATATACGGTTAACAGTAGCAGTCATGCTTTTTGGGCGGAAATGGAATCAAATAGCTAATTATGTTCCTGGCCGAATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAAATTAAAAGATGCAATTGCCAAGCATGGATATTGCTGGTCTAAGATTGCTGAAGAACTGCCTCCCCGTACTGATTCTCAATGCCGAAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTCCAAGAAGCAAAAAAGAAGCAAAGGTCTATTATTGGTAGTAACTTCGTTGATCGAGAATCTGAACGCCCAACCATTACACTTACCGACTTTCTACCTTTACTTGCGTTAGCTCCAAAATCTGATGTTGGTTCTTCAAACATCAGGAAGAAGCACAAGTCAAGTAATGTTTCCAAGAAAAAGAGCTCTAAGAAAGGTGCAAAAAGAACTAAACGTACCAAAGAAGTAGTAGATACAGAGGTATATCACGATGATGAGTTCTACTCTGTCTCTGCACACAGCGATCTTCCCCAGAAGAAGATGAGGTCCAAAAGACGCACAAAAAGTAGTCGAAACTCTCCCCAGGAATTAGTGGATATCTCTTGTAGTGACAAGGTCCCTTGCATTGAGGGTTCAGAAAACCAGTCTACCTGTGTTACCAATTTTGAAAATCAAGATTCAGACAGCATAACCCTTGCATGTTTTTTACGCAACAAATCAAATGAGACATTATCTAGATTTACCAAAAATTTAAGTCAGACTTCCTTCGCTGGGATTATTACTGATGTTCCTGAGCAGGTTGAAAGTCAAAACCCATCTGATGATCAAGGCGGTTTGTCTCATTCACGGGAGACTGTTGGAACTAAAATTTTGTTCGTGCAGCCGAATATTGCTTCTGATAGACGAGTGAGAAACCAGGAGGATACAAATACTTGGACAAGTGGTGATGATGATGATGACGACCAGATGACCCTTGCATGCATTCTGAAAAAGGTCCCAAGAAAGGGTCACCCTGCCAAATTAAAAACAGGATCTGTATTATTAAATGAAGAACATAGTGCAAGCAATCCAACCATCATATCTGATGACAGTGGACCGTCAATGTCAAAGCATGTTGGTTCTGTTGCTAAACCAACCCATATCATTGTGGAAGAAAAGAATGACGAGCTTTTTCCTCCCCTAACGCAATGCAGGCCAAGGAGGGAGCGAAAACGTCCCTTTAGATATTTGTAG 2907 0.431 MTPRVDDFENDHLSSTDDDDDDGFEEDLSALSRACMIAVPGADDNFAAEDDVPSLDPLTDAGTTIVPVATDSDSDDHDDLECLKRVQSLYQPLSVLPPLEPAVVVSDDDDGVDDLETVRAIMKRFGDYSEGLHEGGIKKLVAEDQISSLGCESDIANGSTHYEPDGGELCPFSQNPMEAATQELIENIEMLLSDFVESSEPDALESSRLQQIRLSFPPVVRCLVDAIRKNRDLKRFLERKKIEIEAKTEENKKIRNNIKLLKGLQAACTRSTGNVLSLKKDPLVQLISAKRSPKKSKKRRKVTSICYGPEENSRVANYRMVLERFPLSLERKKWSKADSGNLFKGIKQQFQEMVLQLSLSLDGTSSEGLRGNAVDMDNIIASIEDLEVTPEMIRNFLPKVNWDLIASMYVGGHTGSECESRWLNYEDPLVNQGAWTKEEDKSLLLIVQDMGIRNWFNIASSLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLCSAVTYFGDSNWQCVASVLERRTGTQCSNRWKKSLCPEKKGSFTQEEDIRLTVAVMLFGRKWNQIANYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLKLKDAIAKHGYCWSKIAEELPPRTDSQCRKRWKVLCPEQVPLLQEAKKKQRSIIGSNFVDRESERPTITLTDFLPLLALAPKSDVGSSNIRKKHKSSNVSKKKSSKKGAKRTKRTKEVVDTEVYHDDEFYSVSAHSDLPQKKMRSKRRTKSSRNSPQELVDISCSDKVPCIEGSENQSTCVTNFENQDSDSITLACFLRNKSNETLSRFTKNLSQTSFAGIITDVPEQVESQNPSDDQGGLSHSRETVGTKILFVQPNIASDRRVRNQEDTNTWTSGDDDDDDQMTLACILKKVPRKGHPAKLKTGSVLLNEEHSASNPTIISDDSGPSMSKHVGSVAKPTHIIVEEKNDELFPPLTQCRPRRERKRPFRYL* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0661 968 CDD SANT 434 479 IPR001005 -
Vra1g0661 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 427 479 IPR017930 -
Vra1g0661 968 ProSiteProfiles Myb-like domain profile. 535 581 IPR001005 -
Vra1g0661 968 Gene3D - 486 534 - -
Vra1g0661 968 MobiDBLite consensus disorder prediction 690 708 - -
Vra1g0661 968 MobiDBLite consensus disorder prediction 681 714 - -
Vra1g0661 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 582 636 IPR017930 -
Vra1g0661 968 SUPERFAMILY Homeodomain-like 408 476 IPR009057 -
Vra1g0661 968 MobiDBLite consensus disorder prediction 1 27 - -
Vra1g0661 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 536 581 IPR017930 -
Vra1g0661 968 Gene3D - 589 635 - -
Vra1g0661 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 480 535 IPR017930 -
Vra1g0661 968 Pfam Myb-like DNA-binding domain 536 579 IPR001005 -
Vra1g0661 968 Pfam Myb-like DNA-binding domain 589 630 IPR001005 -
Vra1g0661 968 ProSiteProfiles Myb-like domain profile. 427 479 IPR001005 -
Vra1g0661 968 CDD SANT 397 425 IPR001005 -
Vra1g0661 968 ProSiteProfiles Myb-like domain profile. 480 531 IPR001005 -
Vra1g0661 968 MobiDBLite consensus disorder prediction 12 26 - -
Vra1g0661 968 CDD SANT 487 531 IPR001005 -
Vra1g0661 968 SMART sant 330 428 IPR001005 -
Vra1g0661 968 SMART sant 535 583 IPR001005 -
Vra1g0661 968 SMART sant 586 634 IPR001005 -
Vra1g0661 968 SMART sant 431 481 IPR001005 -
Vra1g0661 968 SMART sant 484 533 IPR001005 -
Vra1g0661 968 MobiDBLite consensus disorder prediction 731 754 - -
Vra1g0661 968 ProSiteProfiles SANT domain profile. 590 633 IPR017884 -
Vra1g0661 968 Coils Coil 230 264 - -
Vra1g0661 968 CDD SANT 590 631 IPR001005 -
Vra1g0661 968 Pfam Myb-like DNA-binding domain 435 496 - -
Vra1g0661 968 SUPERFAMILY Homeodomain-like 483 577 IPR009057 -
Vra1g0661 968 CDD SANT 538 581 IPR001005 -
Vra1g0661 968 Gene3D - 535 587 - -
Vra1g0661 968 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 16 724 - -
Vra1g0661 968 ProSiteProfiles Myb-like domain profile. 582 632 IPR001005 -
Vra1g0661 968 Gene3D - 430 479 - -
Vra1g0661 968 SUPERFAMILY Homeodomain-like 561 633 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0661 Vra-Chr1 7792547 7802655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0661 215 680 MYB-Related Transcription Factor Family AT3G18100 50.728 6.19e-162 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0661 Myb_DNA-bind_6 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0661 K09422 - gmx:778073 1245.34