Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0660 ATGGGTATCAAGGATCTCCTGAGGTTCATGAAACCTTACATTGAACCTTTCCACATCCATAAGTATGCCGGAAAACGCGTGGGTATTGATGCGTATTCGTGGCTTCATAAAGGGGCTTATTCGTGTAGTATGGATCTTTGTCTTGATTCCGACAGTGTAAGGAAGTTGCGATACATTGAATACTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCGGTTGTTGTTTTTGATGGTGGCAATGCTCCTTGCAAGGCAGCAACTGAGGAAGAAAGGAACAGAAAAAGAAGGGCTAATCGAGAATTGGCAATGACGAAGCTTAAAGAAGGGAATGTTGCTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCGGTTATGGCACATAAGCTAATTCAGACCCTGAAATCTGAGAAAATTGAGTTCGTTGTTGCTCCATATGAAGCAGATGCTCAGTTAGCGTACATGTCTCACATTGGGGTAGAAAATGGTGGGGTTGCAGCAGTGATCACTGAAGATAGTGACCTTATAGCTTATGGCTGTCCAGATATTATTTTTAAGATGGACCGAAATGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTATTTTCGGCTGAGTTTGGTAGACCTTCGTTTCGGAGTTTCAACATGGAACTGTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTGGTTTCCAAGTATCGGAACCTAGATCGTATATTGTCTGTTCTTAAACTCGAGAAAGGCGACCAAATGCCTGAAGATTATGCCAAAACCTTTCAAGAGGCTGTTGCAGTTTTTCAGTATGCTCGAATATATGATACCAATGCCAAAGAACTGAAACACATGAAGCCTCTTCCACAAAATTTTATTGAGTCACATGATGGGAATCTCGATTTCTTGGGGCCAGAAATTCCCTCATCTATAGTCAAAGCAATTGCTGAAGGGAACTTGAATCCATCAACTAAGAAAGCCTTTGATGAGTCTGAATCTTCTAGATTTCCTCTGCACCCCAATGATCTCCAAAGCTTTGATCAAGTTCAAAAAGCTGAAGTTCCTACACCATCTAGGCCAAAGAATAGCTTTTCAATCATTGCTTCCCAGTACACCAGAGAAAATAGTACAGTGACAAGGCTCTTAGATGAAGAGAAGTATTCCAATGAATTCTTGGACCTTAGAAAACTAATCATGCCTTTGGGAACAATTAGAACAGAAGAAAAGACAACTGTTTCTGATAACACTCTTTTGAAGGTTCCTGATAACAATCCATTTAGGATAAGAAGAAATGAGGAAAGATATCAGACAAAGGACAATGTTGAAAATATTTCTGTTGCAAGCTGCTTGGAATATACTGACTTGTGCATGTCTCCAGATAACTTTCAAGAAGAGGGGTCTGACGGGAATCTCTTAAAGAAAAGAAAATTTCAGAACACTTTATCAGATAAAGCTGAAGCAACCTTTGAACCGGTTTCAGTAGTGACAGAAGCTGAAAAATCTGATGTTGTATGTTTGACAGTGGAATCCCCAGAAAGTGTAACTTCTGAGACTAAGATAATTGCTGATTTGAAAGGAAAAAGTGAAAGTAAAAAGAAATCCAATAGAAGAAGCAACAGCAAGAAAACGGGTAGTAATAACAACAGAACGCTTTTGCATTTCTTTTCTAGAGTGTAA 1734 0.3968 MGIKDLLRFMKPYIEPFHIHKYAGKRVGIDAYSWLHKGAYSCSMDLCLDSDSVRKLRYIEYFMHRVNLLRFYKITPVVVFDGGNAPCKAATEEERNRKRRANRELAMTKLKEGNVAAASELFQRAVNITPVMAHKLIQTLKSEKIEFVVAPYEADAQLAYMSHIGVENGGVAAVITEDSDLIAYGCPDIIFKMDRNGNGERIELEKVFSAEFGRPSFRSFNMELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKGDQMPEDYAKTFQEAVAVFQYARIYDTNAKELKHMKPLPQNFIESHDGNLDFLGPEIPSSIVKAIAEGNLNPSTKKAFDESESSRFPLHPNDLQSFDQVQKAEVPTPSRPKNSFSIIASQYTRENSTVTRLLDEEKYSNEFLDLRKLIMPLGTIRTEEKTTVSDNTLLKVPDNNPFRIRRNEERYQTKDNVENISVASCLEYTDLCMSPDNFQEEGSDGNLLKKRKFQNTLSDKAEATFEPVSVVTEAEKSDVVCLTVESPESVTSETKIIADLKGKSESKKKSNRRSNSKKTGSNNNRTLLHFFSRV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0660 577 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Vra1g0660 577 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Vra1g0660 577 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Vra1g0660 577 SMART xpgn3 1 102 IPR006085 GO:0004518
Vra1g0660 577 Gene3D - 1 211 - -
Vra1g0660 577 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Vra1g0660 577 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Vra1g0660 577 Coils Coil 91 111 - -
Vra1g0660 577 Gene3D - 218 291 - -
Vra1g0660 577 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 571 - -
Vra1g0660 577 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vra1g0660 577 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Vra1g0660 577 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Vra1g0660 577 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Vra1g0660 577 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 571 IPR006084 -
Vra1g0660 577 CDD H3TH_FEN1-like 223 295 - -
Vra1g0660 577 MobiDBLite consensus disorder prediction 538 568 - -
Vra1g0660 577 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Vra1g0660 577 SMART xpgineu 141 213 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0660 Vra-Chr1 7787051 7801788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0660 1 313 Core DNA Replication Machinery Family AT5G26680 23.242 2.17e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0660 K10746 - gmx:100817932 879.011