Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0654 ATGGCTAGTGTTGTGACACAGAAAGTGAAGCTTCTTGTGGCATTGCTTACCCTGCAGCTCTGCTTTGCAGGATATCACATTGTGTCTAGACTTGCACTAAATATTGGAGTCAGCCAAGTTGTTTACCCCGTTTATCGAAATTTGATTGCTTTGCTTTTGTTGAGCCCATTTGCTTATGTGTTAGAGAAGAATCAAAGACCACCCCTCACTTTATCTTTACTGGTTCAGTTCTTCCTACTTGCATTACTGGGGATCACAGCAAACCAAGGGTTTTACTTGCTGGGATTATACTATGCTTCTCCAACTTTTGCTTCTGCATTGCAAAACTCAGTTCCTGCTATCACTTTTGTCTTGGCTTTGGCTTTAAGGCTTGAGGAAGCCAACATCACAAGGAGAGATGGATTGGCAAAAGTTCTTGGAACCATTGCCAGTGTGGGGGGTGCCACAGTAATTACTCTTTACAAAGGTCCCCCTCTTCTTCACCTGCAGATGGACCTAACACAAGGAGACACTTTAGAAGTAGATCAATCAACAAAGACGCAAAATTGGACTTGGGGCTGCATATACTTGCTTGGACATTGTCTGTCATGGGCTGGCTGGATAGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACCCTCACTTCGTTTACATGCTTCTTTGGATTGATCCAATTCTTGATCATAGCAGCCTTTGCAGAAGATGACTTGGAGAATTGGAAGATACAGTCACTAGAGGAGCTTTTTATTATCCTATATGCTGGAATTATAGCATCTGGTGTTGTCATATCTCTCCAAACATGGTGTATTCAAAAGGGTGGTCCTGTGTTTGTTGCTGTCTTCCAGCCTGTGCAAACTATTCTAGTTGCTGTCATGGCAGCCCTAATTCTTGGTGATCAGTTATACTCAGGAGGGCTTATTGGTGCAATTCTCATTGTGCTTGGTCTATACTTAGTCCTATGGGGCAAAACCAACGAAAAAAAAGTGACAGAGTCATCACCATCACTAACAAACCCCTTGCTTAAGGCAGAGGAAGAGAATAAAGAAATTGATGCAGCTTCCAAGGACATACCATGA 1086 0.4273 MASVVTQKVKLLVALLTLQLCFAGYHIVSRLALNIGVSQVVYPVYRNLIALLLLSPFAYVLEKNQRPPLTLSLLVQFFLLALLGITANQGFYLLGLYYASPTFASALQNSVPAITFVLALALRLEEANITRRDGLAKVLGTIASVGGATVITLYKGPPLLHLQMDLTQGDTLEVDQSTKTQNWTWGCIYLLGHCLSWAGWIVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFAEDDLENWKIQSLEELFIILYAGIIASGVVISLQTWCIQKGGPVFVAVFQPVQTILVAVMAALILGDQLYSGGLIGAILIVLGLYLVLWGKTNEKKVTESSPSLTNPLLKAEEENKEIDAASKDIP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0654 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 153 - -
Vra1g0654 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 327 - -
Vra1g0654 361 PANTHER WAT1-RELATED PROTEIN 8 341 - -
Vra1g0654 361 MobiDBLite consensus disorder prediction 345 361 - -
Vra1g0654 361 MobiDBLite consensus disorder prediction 332 361 - -
Vra1g0654 361 PANTHER WAT1-RELATED PROTEIN 8 341 IPR030184 GO:0016021|GO:0022857
Vra1g0654 361 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020|GO:0016021
Vra1g0654 361 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0654 Vra-Chr1 7690997 7693904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0654 4 355 Nodulin-like Gene Family AT3G18200 67.507 2.89e-175 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0654 - - gmx:100812601 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0654 1 7690997 7693904 Vra1g0654 1 7690997 7693904 ECH