Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0653 ATGAGCGAAAGCTCAGAGACCCAGAAGCGTGAATCTGCGGATTCAAGGGGCGAGAAGGATGGTGTTGCATCCAAGAAGCCAAAGATTGAGTCTTGTGCAAAGGGTTCCGATGATAATGGTGTAAAGGAGCCATCTTTCCTCATTGAAGCGGATGCCGCCGAAGACAAGGGCTCGAGGCTCACGATGGAGGATGCGTGGGTCGTGCTTCTCGATGCAAGTTTAGATTATCCTGGGAAATTGAGATGTGCACATTTTGCAATTTATGATGGACATGGAGGGCGGTTAGCTGCAGAATATGCTCAAAAGCATTTGCATAGGAATGTTCTTTCTGCCGGATTACCACGTGAGTTGTATGATGCAAAGGCAACTAAACGATCTATTCTGAATGGTTTCCTCAAAACTGACGAGTCTCTTCTTCAAGAAAGTGCTGAAGGAGGATGGCAGGATGGGGCTACAGCCGTATGTGTTTGGGTATTGGGACAGAGAGTTGCAGTTGCTCATATAGGAGACGCCAAGGCAGTATTAGCTCGGTCAACTGATGGATCTCAAAATCCAGATGGTGTCCAGGCGCTGAAGGCCATTGTTCTGACTAGAGAACACAAACCTATCTTCCCACTGGAGCGTACACGCATTCAGAAGTCAGGCGGTTTTGTGAGCTCAGATGGACGATTATTAGGGCGTCTTGAAGTTTCTAGAGCTTTTGGAGATCGCCAGTTTAAAAAGGTAGGCCTTGTTGCAAGCCCGGATGTCTATACTTTTGAAGTTACAGATACTGAGCATTTCATCATTCTTGGCTGTGATGGCTTGTGGGGGGTATTTGGTCCCAGCGATGCTGTTGATTTTGTTCAGAAGTTATTGGATGAGGGGCTTCCTGTTGCCACCGTGTGCCGTCGTCTTGTAAGGGAGGCTGTCCGTGAGCGTCGCTGTAAAGATAACTGCACGGCCATTATTATTGTATTTAAGCACAAATAA 972 0.4722 MSESSETQKRESADSRGEKDGVASKKPKIESCAKGSDDNGVKEPSFLIEADAAEDKGSRLTMEDAWVVLLDASLDYPGKLRCAHFAIYDGHGGRLAAEYAQKHLHRNVLSAGLPRELYDAKATKRSILNGFLKTDESLLQESAEGGWQDGATAVCVWVLGQRVAVAHIGDAKAVLARSTDGSQNPDGVQALKAIVLTREHKPIFPLERTRIQKSGGFVSSDGRLLGRLEVSRAFGDRQFKKVGLVASPDVYTFEVTDTEHFIILGCDGLWGVFGPSDAVDFVQKLLDEGLPVATVCRRLVREAVRERRCKDNCTAIIIVFKHK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0653 323 Gene3D - 25 323 IPR036457 -
Vra1g0653 323 ProSiteProfiles PPM-type phosphatase domain profile. 49 320 IPR001932 -
Vra1g0653 323 MobiDBLite consensus disorder prediction 1 41 - -
Vra1g0653 323 MobiDBLite consensus disorder prediction 1 37 - -
Vra1g0653 323 PANTHER PROTEIN PHOSPHATASE 2C 7 317 IPR015655 GO:0004722|GO:0006470
Vra1g0653 323 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 7 317 - -
Vra1g0653 323 SUPERFAMILY PP2C-like 46 321 IPR036457 -
Vra1g0653 323 SMART PP2C_4 35 318 IPR001932 -
Vra1g0653 323 CDD PP2Cc 53 320 IPR001932 -
Vra1g0653 323 Pfam Protein phosphatase 2C 54 308 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0653 Vra-Chr1 7684724 7689069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0653 46 272 PP2C-type Phosphatase Gene Family AT1G18030 72.174 2.89e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0653 K17500 - gmx:100815852 550.821