Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0645 ATGCCTGTTGTGACTGAACACATGAAGTGGAGAAGACCAAGAAACCAATTCGGATGCCCCATTTCAGAAACTGACCCAAATCCTCAAATCCCTTCTACAATCCAATCATCTCACACCAAATTCACCATCTCTTCTCTCTTATCTTCATTCTCCACCTCTAATGAAACCACACATGTCAGAGACCAAAACAGCACCAAAAACAGCAAAAAATTCTCTACAGCAAGCTTCAGAGGACTCGGTTGCACTGTCAAAGCATCACAGAAGGTTTCTGTGCCCACGGTGATCCGGTCCTCGGCGGATTGGGAAGGAAAGAGGAGCAGGAAGAAAAAACACAGGACGAACGGTAACAGTAACAGTAACAAGACATGTGATGGGGTTGTTGATGATGTTTCTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCCGGTATTGGGTTCTCAACAGATGCTGCTGCTGCTGCATCTGTGGACTGTGTTGTGGCTAGGAAGGATGCTTCTGCAAGAGGAAAACTTGATGTGGTGGAGAGGGAGCGTTCATCTTACTTTGGAAGGCGCATTGTAAAGCCAGAAAACTTCTCTTTTCTGGATGATGAATCTGATATCTTCACAGCACGTACTGGGTTAGACCCTTTTGGAACTGCTAGATTCTATCGCCACGTTCCACATCCTTCTCCTGATGGTCTTCCTGAGATAATGATAATCCGAGGAAGAAGAATAATAATGGGGGGTCGCTTTAACTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAGCTGGGTGAGAGAATAGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGGAAAGTTAAACTTTCAAGTTCAAATGATGCATCAAAGCATCAAGAAGACAAAAAGTGCAGTGTTTGTCAGGAGGAGTATGAAGCAGGTGATGAGTTGGGGAAATTGAAGTGTGATCACAGCTATCACTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTTGTTCGACCCTAA 1083 0.4395 MPVVTEHMKWRRPRNQFGCPISETDPNPQIPSTIQSSHTKFTISSLLSSFSTSNETTHVRDQNSTKNSKKFSTASFRGLGCTVKASQKVSVPTVIRSSADWEGKRSRKKKHRTNGNSNSNKTCDGVVDDVSGGTCVDFQDVWCGPGIGFSTDAAAAASVDCVVARKDASARGKLDVVERERSSYFGRRIVKPENFSFLDDESDIFTARTGLDPFGTARFYRHVPHPSPDGLPEIMIIRGRRIIMGGRFNSHDQFRDWRLDVDNMSYEQLLELGERIGHVSTGLKEDEMGHNIRKVKLSSSNDASKHQEDKKCSVCQEEYEAGDELGKLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0645 360 SUPERFAMILY RING/U-box 305 358 - -
Vra1g0645 360 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Vra1g0645 360 MobiDBLite consensus disorder prediction 94 120 - -
Vra1g0645 360 Pfam Ring finger domain 311 353 IPR001841 -
Vra1g0645 360 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 3 357 - -
Vra1g0645 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 358 IPR013083 -
Vra1g0645 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 357 IPR045191 GO:0061630
Vra1g0645 360 SMART ring_2 312 352 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0645 Vra-Chr1 7516729 7521903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0645 4 267 C3H Transcription Factor Family AT1G73760 39.929 3.83e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0645 - - gmx:100818517 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0645 1 7516729 7521903 Vra1g0645 1 7516729 7521903 ECH