Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0634 ATGAGATTTAAGTGGGATCTCTTTGAGTGCTGCTTCCCTAGCACTTCTTCTGACACATTTCAAAAGCGCAGTAACTTGAAGTGGCCAATCATTCCCTACAAGGAAATTGAAAAGGCCACAAATAATTTTGATCAATCTCGTCATCTTGGAAGTGGAGAAAGAAAGAAAGGCTTTATCAGTCAGTACTACGGAACACTTGAGGATGGACGTGAGGTTACAATTCAGCGCTTTACAGAAGACAAGCGCTACATATTGCAACAGTTTATCAATGAAACTGTTATCCTAAATTACTTACCCCACAAAAATATTGTGTCAATTTACGGATGTACTTCTCATCATGAGGAACCTCTGCTCGTGCATGAATACCTATCCAGTGGAAATCTTGCTGCACATTTTCGAGGTGAAAAGGACGAAAACATTGCACTACCCTGGCTTAAACGATTGGATATAGCCATTGATATTGCAAATGCATTGGCCTATCTTCACTATTACGGCATCATCCATCGTAATGTGAAATCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGGTAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTTGACACCACCCATGTTACTAGTGATAGGGTAGGTTCAAGTGGTTATATAGACCCAGAGTATTTGACAAAAGGCCAGCTTAGTGTGAAAATTGATGTTTATAGCTTTGGAGTGGTGTTGTGTGAGCTTCTATCATCAAAGCTTTCAATATTCCATATTATGAATGAGGAGGATAATCTTGATACCCTTTTAAGAAGAAAAATTGAAAACAAAACTTTGGTGGAGCTGTTTGATCCAAGACTTGGGTTCCAATCAAACCTTAACATCAAGCAGTTGATGACTGCTACAGCTGAGCTTGCAGTTCTCTGTATGAAATGTCCACAAGAATCGAGGCCAAACATGGAACAGGTGCTAGAGATTCTCAATGAAATGAAGCAAGGGAGATATGTAACAAACTCTCACTCAACTAAAGCTTTGAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAATAATTTTGGCACCTGCCTTGGTAAGGGAGGGTATGGCAGCGTATATTATGGAAAACTTAAAGATGGACTAGAGGTTGCAATAAAATGTTTCCATGACGAGAATGAGACAGAAGAGACCATTAAGCAATTCATGAAAGAATCTGATATCTTAGGTCTCTTGCACCACCAAAATCTGGTCTCACTCTATGGCCGCACTTCTCGCCATTGCAAGAAACACATGCTAGTGTATGAGTACATCTCCAATGGCACACTTTCCAAACATCTTCATGAGTCTTCCAGTGATAAACTACCATGGCAAACTAGATTGAATATTGCCATTGAAACTGCGACTGCATTGGTATTTCTTCATGACTCAAGTGTCATCCACCGTGATGTGAAAGGGAGTAACATTCTGTTGGATGAAAATTTTAATGTTAAAGTTGCTGATTTTGGATTCTCACGGTCTCTTCCAGATCATGTTACTCATGTTACAACTATTCCAGTAGGAACTCGTGCTTATATAGATCCTGACTATTATATATCTGGAAGGGTCAGTAACAAAAGTGATGTTTATAGTTTTGGAGTGGTCTTGTTTGAACTCATATCATCTATCCACCCAAGTTTGGTAGCAGGCACAGATAATGAGACTCTGGCACAATTTGCAAAGAGAAAAATCTTGAACAATGAATTAAACGAGATAGTTGATCAAAGCTTTTCCTGTGGTTCTGACGATAACATTTTGGAAATGATATCAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGTTCAGACCATCCATGAAACAGGTGCTAGAGACCTTGGAGGGCATAAGTAAAGGAAAATGGGGATTCAACCAGATGACATAG 1914 0.3955 MRFKWDLFECCFPSTSSDTFQKRSNLKWPIIPYKEIEKATNNFDQSRHLGSGERKKGFISQYYGTLEDGREVTIQRFTEDKRYILQQFINETVILNYLPHKNIVSIYGCTSHHEEPLLVHEYLSSGNLAAHFRGEKDENIALPWLKRLDIAIDIANALAYLHYYGIIHRNVKSSNILLDVNFSAKLGNLHLSCKLPDGVPVDTTHVTSDRVGSSGYIDPEYLTKGQLSVKIDVYSFGVVLCELLSSKLSIFHIMNEEDNLDTLLRRKIENKTLVELFDPRLGFQSNLNIKQLMTATAELAVLCMKCPQESRPNMEQVLEILNEMKQGRYVTNSHSTKALKIFHHAELEEATNNFGTCLGKGGYGSVYYGKLKDGLEVAIKCFHDENETEETIKQFMKESDILGLLHHQNLVSLYGRTSRHCKKHMLVYEYISNGTLSKHLHESSSDKLPWQTRLNIAIETATALVFLHDSSVIHRDVKGSNILLDENFNVKVADFGFSRSLPDHVTHVTTIPVGTRAYIDPDYYISGRVSNKSDVYSFGVVLFELISSIHPSLVAGTDNETLAQFAKRKILNNELNEIVDQSFSCGSDDNILEMISAVAELAFQCVQCPKEFRPSMKQVLETLEGISKGKWGFNQMT* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0634 637 SUPERFAMILY Protein kinase-like (PK-like) 336 626 IPR011009 -
Vra1g0634 637 Gene3D Transferase(Phosphotransferase) domain 1 123 326 - -
Vra1g0634 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vra1g0634 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 637 IPR044652 -
Vra1g0634 637 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0634 637 SMART serkin_6 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0634 637 Gene3D Transferase(Phosphotransferase) domain 1 431 633 - -
Vra1g0634 637 PANTHER TYROSINE KINASE FAMILY PROTEIN 25 637 - -
Vra1g0634 637 Gene3D Phosphorylase Kinase; domain 1 327 430 - -
Vra1g0634 637 Gene3D Phosphorylase Kinase; domain 1 15 122 - -
Vra1g0634 637 Pfam Protein kinase domain 66 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0634 637 Pfam Protein tyrosine and serine/threonine kinase 354 623 IPR001245 GO:0004672|GO:0006468
Vra1g0634 637 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Vra1g0634 637 SUPERFAMILY Protein kinase-like (PK-like) 23 326 IPR011009 -
Vra1g0634 637 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0634 637 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0634 Vra-Chr1 7357996 7361631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0634 339 626 Receptor kinase-like Gene Family AT1G25390 50.340 5.83e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra1g0634 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0634 - - vra:106773095 1272.3