Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0633 ATGAGCCTGCTTTTTCATCATTCACTCAGCATTCCAATGACGTTTATTGATTGCCTTATGAGAATGAGGTGTAATCTCTTTGAGGGCTGCTTCACTAGCACTTCTGACACATTTCAAAAGCAGAGCAAATGGAAAATCTTGCCCTACAAGAAACTTGCAAAAGTCACAGATAACTTTGATCAGTCTCATTGTCTTGGAAAAAGAGGCTTTGCCACTGAATATTACGGAAAACTTGCAGATGGGCGTGAGATTACAATCCAGTGCTTCAACGAAGATAAGCACCACATATTGCAACAGTTTATCAGTGAAACTACTATCCTAAATTACTTGCCTCACAAAAATATTGTGTCAATTTATGGATGTGCTTCTCATCACGAGGAATCTATGCTAGTCCATGAATACTTATCCAATGGAAACCTTGCTGCTCATCTTAAAACTGAAGACGAAAACACCACACTACCTTGGCTGACACGATTTGACGTAGCCATTGATATTGCAAATGCATTGGACTATCTTCACTATAATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGCAAATCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTCTATGCAGCCCATGTTACTAATGATATAATTGGAACATGTGGTTACATCGACCCAGATTATTTGACAAAAGGCCAGCTTAGTGTAAAAAATGATGTGTATAGCTTTGGGGTGGTGCTGTGTGAGCTTCTATCATCAAAGCTGGCAAAATCCTGGGTTCTGAATGAGGAGGACGATCTCGCTACACTTTTAAGAACAAAAATTGAAAAGCAAGCTGTGGTGGAGCTGTTGGATCCAAGACTTGACTTCCAATCTAACCATAAGATCAAGAGGATGATGACTGCTACAGCTGAGCTTGCACTTTTGTGCATGCAATGTCCACAAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGATTCTCAAAGGTATAAAGCAAGGGAGACATGAAACAAACGCAACAAAAGCTTTGAAAATCTTCCACCATGGTGAACTTGAAGAAGCTACAAACAATTTTGATACTTGCCTTGGAAAGGGAGGCTATGGCACCGTGTACTATGGAAAACTTAAGGATGGAAGAGAGGTGGCAATAAAATGTTTCCATGAAGAGAGTGAGACAGAAAAGATCATTGAGCAATTCATGAAAGAAACTGAGGTATTGGTTTGGTTGCAGCATAAAAATCTGGTTTTACTTTATGGTCGCACTTCTCGCCATAGCAATAAACACATGCTAGTGTACGAATACATCTCCAATGGCACTCTTTCTAAACATCTTCATGACTCTTCCTGTGATAAACTACCATGGCATACTAGATTGAACATTGCCATCGAAACTGCAACTGCATTAGTATATCTGCATGACTCAGGTATCATCCACCGAGATGTGAAAGGGAGTAACATTCTGTTGGACGAAAATTTTACTGTTAAAGTTGCAGATTTTGGATTCTCACGGTATCTCCCAGATTATGCCACGCACGTTTCCACTATTCCAGTAGGAACTCGTGCTTACATAGATCCTGACTACTATGAATCTGGAAGGGTCTGTGACAAAAGTGATGTCTATAGTTTTGGGGTGGTCTTGTTTGAACTTATATCTTCCAACTCGCCAAGTTTAGTTGAAGGAACAGATTACGTTACTCTTGCACAGTTTGCAAAGAGAAAAATATTAAACAAGGAATTAAACGCGGTAGTGGATCCAAGCTTTTGGTTTGGTGTTGACAGAAACATGATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGTACTCAGACCTTCCATGAAACAGGTGCTGGAGACACTTGAGGGCATTAGCAAAGGAACATGGGGATTCAACCAGATAACATAG 1941 0.4044 MSLLFHHSLSIPMTFIDCLMRMRCNLFEGCFTSTSDTFQKQSKWKILPYKKLAKVTDNFDQSHCLGKRGFATEYYGKLADGREITIQCFNEDKHHILQQFISETTILNYLPHKNIVSIYGCASHHEESMLVHEYLSNGNLAAHLKTEDENTTLPWLTRFDVAIDIANALDYLHYNGIIHRNVKSSNILLDVNFSAKLANLHLSCKLPDGVPVYAAHVTNDIIGTCGYIDPDYLTKGQLSVKNDVYSFGVVLCELLSSKLAKSWVLNEEDDLATLLRTKIEKQAVVELLDPRLDFQSNHKIKRMMTATAELALLCMQCPQELRPSMEQVLEILKGIKQGRHETNATKALKIFHHGELEEATNNFDTCLGKGGYGTVYYGKLKDGREVAIKCFHEESETEKIIEQFMKETEVLVWLQHKNLVLLYGRTSRHSNKHMLVYEYISNGTLSKHLHDSSCDKLPWHTRLNIAIETATALVYLHDSGIIHRDVKGSNILLDENFTVKVADFGFSRYLPDYATHVSTIPVGTRAYIDPDYYESGRVCDKSDVYSFGVVLFELISSNSPSLVEGTDYVTLAQFAKRKILNKELNAVVDPSFWFGVDRNMMEMITAVAELAFQCVQCPKVLRPSMKQVLETLEGISKGTWGFNQIT* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0633 646 PANTHER TYROSINE KINASE FAMILY PROTEIN 39 646 - -
Vra1g0633 646 Gene3D Phosphorylase Kinase; domain 1 352 439 - -
Vra1g0633 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Vra1g0633 646 Pfam Protein tyrosine and serine/threonine kinase 65 332 IPR001245 GO:0004672|GO:0006468
Vra1g0633 646 Pfam Protein tyrosine and serine/threonine kinase 364 586 IPR001245 GO:0004672|GO:0006468
Vra1g0633 646 SUPERFAMILY Protein kinase-like (PK-like) 43 335 IPR011009 -
Vra1g0633 646 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Vra1g0633 646 SUPERFAMILY Protein kinase-like (PK-like) 345 636 IPR011009 -
Vra1g0633 646 ProSiteProfiles Protein kinase domain profile. 59 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0633 646 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 39 646 IPR044652 -
Vra1g0633 646 ProSiteProfiles Protein kinase domain profile. 361 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0633 646 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vra1g0633 646 Gene3D Transferase(Phosphotransferase) domain 1 135 351 - -
Vra1g0633 646 Gene3D Transferase(Phosphotransferase) domain 1 440 640 - -
Vra1g0633 646 SMART serkin_6 59 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0633 646 SMART serkin_6 361 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0633 Vra-Chr1 7353723 7357462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0633 348 635 Receptor kinase-like Gene Family AT1G25390 52.041 1.52e-88 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra1g0633 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0633 - - vun:114181918 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0633 1 7353723 7357462 Vra1g0633 1 7353723 7357462 ECH