Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0632 ATGAAGAAAATCTATGGCTATATATACAACTATCATCATCTCATTCATAACCTATTCCTTAGCTTTACGTTTCTTAGTCCTCTAACCATGCCAAAACCCTATCACTCCCTCTTTGCAGTGTTCATCATTCTGGTGACATGTCATGCTCAAACTGATAGTAACACATCAACAGTATGTGCTCCTTCTAACTGTGGTAACATATCCATCGGTTACCCATTTTGGAAGAAGTCCGACACCAATGTTGGAGAGTTTTGTGGCTACCCTGAGTTTGGTCTTGAATGCTCGGACAACCATGCCATCATTAGATTTCCAACTGACACATACCGAGTCGCAGATATAAACTATGATGATCGTTCAATTACACTTCTTGACATAGATGTTTTGGACCAACCATGTCCTAGGGCACGACACAATGTTTCCCTACAAAACCTTCCTTTGTCTTTCAGCTCTCTAGATTTGAATCTGAGTTTCTATTTCAACTGCAGCTCTTATCCTGCATCTGTTGAGCACATAAGGTGCATGCAGCAACATGATCATAAGAATCAGTCTTACGTGTTTCTGGCTGGGGATGAAGTTGAAAATGGATACGGTTGGGTGAGGCAGTGCGATGAGCATGTTGTGGTGACGGTGAAGCAAGAAGAGATCGATGGTACTAATTTGATCACTGGTTTTGGTGATGCCATGAAGAAAGGGTTTGTGCTTGATTGGGTGAGTGCTAAGGATTGTGCAGCGTGTGAGGATTCTGATGGCTATTGCAGATACGATCATACCACCAAGCAATCAAGTTGCTTATGCAGAGATGGCAGAACTGTTGCCAAAAGTTGCAAAAAAGGAAGAGTGAATTGGAGAATGAAAACTATTATAGGTGTTTGTTCTGGTGTAGGGGGAGCACTTATAGTGGGCCTTTGCGTCTATATTTTTATTCGTAGAAGGAAGAATAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAAGTCACAGCTTCACTCAAAGCATTATACCTGGAGTTCATCTCTTCTCCTATGAAGAACTGGAAGAGGCCACGAATTACTTTGACCCATCTAAAGAACTAGGAGAAGGGGGCTTCGGGACAGTGTATTTTGGCAAACTGCGAGATGGGCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTGCACAGTTCATGAATGAAATCAAAATCCTAACTCGTATTGATCATCCAAATCTTGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGAGAACTTCTGCTTGTATATGAGTACATTCCTAATGGAACTGTTGCAGACCATATTCATGGTGAACGATCTAAACCTGGAACACTCCCCTGGCATATCAGAATGAATATTGCTGTGGAAACTGCAAGTGCACTGAAATTTCTTCATCTCAGAGATATCATCCACAGAGATGTTAAAACCAACAATATTCTTCTTGACAGCAACTTCCGTGTGAAGGTGGCAGATTTTGGACTCTCGCGTCTTTTCCCAGACCATGTCACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTATAGTTTTGGAGTGGTGCTGGTTGAAATGATATCATCCCTGCCTGCTGTTGACATAACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGACCCTAACCTTGGTTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAGTGGTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGAGATGAGACCTTCAATGGAAGAAGTGGTGGAGACTCTGAAGGATATACAGAGTGATGGAAAGAGTAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACATCTGATGATGTTGTGTTGCTGAAGGATGATCCTCCTCCACCATCACCAGATTCTAATGCTGTAAGCAAGACAACAACACCAAATACTAGTGGATGA 2067 0.4233 MKKIYGYIYNYHHLIHNLFLSFTFLSPLTMPKPYHSLFAVFIILVTCHAQTDSNTSTVCAPSNCGNISIGYPFWKKSDTNVGEFCGYPEFGLECSDNHAIIRFPTDTYRVADINYDDRSITLLDIDVLDQPCPRARHNVSLQNLPLSFSSLDLNLSFYFNCSSYPASVEHIRCMQQHDHKNQSYVFLAGDEVENGYGWVRQCDEHVVVTVKQEEIDGTNLITGFGDAMKKGFVLDWVSAKDCAACEDSDGYCRYDHTTKQSSCLCRDGRTVAKSCKKGRVNWRMKTIIGVCSGVGGALIVGLCVYIFIRRRKNSYVMSYIQSRSLSSDPSSKDTEKGSHSFTQSIIPGVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIKILTRIDHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHIHGERSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPDHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVEMISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNLGFESDFKVRKMISGVAELAFQCLQSSKEMRPSMEEVVETLKDIQSDGKSKSQPEVMDISSTSDDVVLLKDDPPPPSPDSNAVSKTTTPNTSG* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0632 688 Pfam Protein kinase domain 367 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0632 688 SMART serkin_6 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0632 688 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Vra1g0632 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Vra1g0632 688 SUPERFAMILY Protein kinase-like (PK-like) 346 652 IPR011009 -
Vra1g0632 688 ProSiteProfiles Protein kinase domain profile. 364 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0632 688 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 36 677 - -
Vra1g0632 688 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 36 677 IPR044652 -
Vra1g0632 688 Pfam Wall-associated receptor kinase galacturonan-binding 59 124 IPR025287 GO:0030247
Vra1g0632 688 Gene3D Transferase(Phosphotransferase) domain 1 441 662 - -
Vra1g0632 688 Pfam Wall-associated receptor kinase C-terminal 173 268 IPR032872 -
Vra1g0632 688 MobiDBLite consensus disorder prediction 639 688 - -
Vra1g0632 688 Gene3D Phosphorylase Kinase; domain 1 335 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0632 Vra-Chr1 7335893 7349079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0632 49 688 Receptor kinase-like Gene Family AT1G25390 44.037 1.04e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra1g0632 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0632 - - gmx:100800873 728.398