Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0630 ATGACCAAGAACTTCAGAGTAAAGCTGGGACAAGGTGGATTTGGTGCAGTGTACAAGGGAGAGTTATCCAATGGTAGTTTTGTGGCTGTAAAGATGTTGAGTGCTTCCAAAAAAAATGTTGAAGAACTTGTGAATGAGGTTGCTAGCATAAGTAGAACTTCTCATGTTAACGTTGTCTCTCTTCTTGGATTTTGTTTGAAAGGTCCCAAGAGAGCTCTCATCTATGAATTCATGTCCTATGGTTCCCTTGACAAATTCATTTACACAACAAGAGATCAAACCCTTCCACCCTTGTCTTGGAATATTATATATCAAATCGCAAGGGACATAGCTCGAGGCTTAGAATACTTGCATAAGAGATGCAACACTCGAATTTTTCATTTTGACATAAAACCACATAACATTCTTCTGAATGAGAACTTCTGTGCAAAGATATCAGATTTTGGGTTGGCAAAACTGTGCCCTAGGAATGGAAGTATCCTTTCCCTGTCAGATGCTAGAGGAACAATGGGGTATGTAGCTCCAGAAATGTGGAGCAGAAATTTTGGAAGAGTTTCGCATAAGTCTGATGTTTATAGTTATGGAATGATGCTGCTAGAGATGGTTGGAGGAAGGAAGAACATTAATGCCGAAGCAAGTCATACAAGTGAGATATACTTCCCACACTGGGCATACAATAAGCTTGAGTTGGAGAATGATTTGAGACCAGATATGGAGATGACAACAGAAGAAAATGAGATTGCAAAGAGGTTGGCAATGGTGGGTTTATGGTGTACTTAA 780 0.3962 MTKNFRVKLGQGGFGAVYKGELSNGSFVAVKMLSASKKNVEELVNEVASISRTSHVNVVSLLGFCLKGPKRALIYEFMSYGSLDKFIYTTRDQTLPPLSWNIIYQIARDIARGLEYLHKRCNTRIFHFDIKPHNILLNENFCAKISDFGLAKLCPRNGSILSLSDARGTMGYVAPEMWSRNFGRVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWAYNKLELENDLRPDMEMTTEENEIAKRLAMVGLWCT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0630 259 Gene3D Transferase(Phosphotransferase) domain 1 78 259 - -
Vra1g0630 259 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 258 - -
Vra1g0630 259 SUPERFAMILY Protein kinase-like (PK-like) 7 225 IPR011009 -
Vra1g0630 259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vra1g0630 259 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 258 IPR045874 GO:0004672
Vra1g0630 259 Pfam Protein tyrosine and serine/threonine kinase 6 207 IPR001245 GO:0004672|GO:0006468
Vra1g0630 259 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vra1g0630 259 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0630 259 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vra1g0630 259 ProSiteProfiles Protein kinase domain profile. 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0630 Vra-Chr1 7306034 7306900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0630 1 258 Receptor kinase-like Gene Family AT1G66980 56.489 6.41e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra1g0630 PK_Tyr_Ser-Thr 7.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0630 - - gmx:100800335 404.831