Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0628 ATGAGAGAGAGGGTTGTGAGGGAAGTGAGAAGAAGTGTGAGAATGGATGATAAACATACTCACATCCACACCTCTCCCCTTGCCTTCGCACTTACCGTCTCTTGCTTCTTCTGCATCGCTTTGCCACATTCTCACTCTCAACCATCGCCACCGCCATCGTCACCTCCACCGCCTTGTGCTGAGCCGTCATACATGTGCAGAATAAACGTTTCCGGCAACTTGGATCCTGTCTGGAAACAGATTCCTCCCTCTCAGTGTATCAGCTCTGACTCATCACCCCAGCTCAGCTGCTCTGCTTCTTATGAATCTCAAAATTTCACAGTGAAGAAGTTCAACAACTCCATTCACACCATGACGGTGGTGCCAGCACACACTGTCAACGATGTTTGTTCTCCTGATTTTTTTCACATTTACGACAACTTGAAGAACAGTCTGTTAAAGCATTATGAGTCAACGCGAAACGTCATAGTATTCTTCGATGGTTGTCCTCTCGACATCCCAAATTTCCCTTCAGAACGCAAATTTAAATGCGGGGATGCTGTGTACTATTTTAGGGGGCGGGATGAGACGTACGTACACACATCGCTTGAGTATTGCAAGAAAAGTTTGTTGGTGCCCATTGCCGCTCCTCTCGGTGATTACGATAATAAAGATGGTGGAGCTGAAGTTCTGAAAGAAGCTTTGAGGGATGGGTTTCAGATCTCCTATAGTCCTCCTCAACGTTGCAGAAGATGCACTGAAATTAACGGAAATTGCTGGAGCGGTGGTTATGGTTATAATGGAGATGTAGTTTCATGCAACTACTATTGCCCAAATCAATACTGTTCTCCCAAAAGCAAAAGTAATGGAAATTGGGACCAAAAGAGGAAATTCATTATTTTAGGTGTTACAGGTTCAGCAATTGCAGCGGTGTTGATATTATTTTCAATTCTGTGCGTAAGATACACGTCACCAACCTGGCAAGCAAATTTTGGGTTGGCTTCAAAAAGTAATCAAAATATCGAAGCATTCCTTAGAATTCATGGCCCTCTAGCTCTGAAAAGATATAAACTATCAGATGTTAAGAAAATGACCAACAACTTCAGAGTAAAGCTGGGACAAGGTGGTTTTGGTGCAGTATACAAGGGCAAGTTATCCAATGGTAGTGTTGTGGCNGTAAAGATGTTGAGTACATCCAAAAAGAATGGTGAAGAATTTGTGAATGAGGTTGCTAGCATCAGTCGAACTTCTCATGTTAACGTTGTCTCTCTTCTTGGATTTTGTTTGAAAGGTCACAAGAGAGCTCTCATCTATGAATTCATGTCCAATGGTTCCCTTGACAAATTCATTTACAGAACAAGAGATGAAACCCTTTCTGCCTTGAGTTGGGATATTATGTATCAAATTGCAAGGGACATAGCTCGAGGCTTAGAATACTTGCATAAGGGATGCAACACTCGAATTTTTCACTTTGACATAAAACCACATAACATTCTTCTGGATGACAACTTCTGTGCAAAGATATCTGATTTTGGGTTGGCAAAACTGTGTCCTAGGAATGAAAGTATCGTTTCCTTGTCAGATGCTAGAGGAACAATGGGGTATGTAGCTCCAGAGATGTGGAGCAGAAATCTTGGAAGAGTTTCGCATAAGTCTGATGTTTATAGTTATGGAATGATGCTGCTAGAGATGGTTGGAGGAAGGAAGAACATTAATGCCGAAGCAAGTCATACAAGTGAGATATACTTCCCACACTGGGCATACAATAAGCTTGAGTTGGAGAATGATTTGAGACCAGATATGGAGATGACAGCAGAAGAAAATGAGATTGTAAAGAGGTTGGCGATGGTGGGTTTATGGTGTACTCAAACGTTTCCTAATGATAGACCTACAATGAGCGAAGTGATAGATATGTTGGAAGGCAACATGGATTCCATACAAATCCCACCCAAACCTTTGCTTTCTTCTCCGACTAGATCAGTACCAGAGTATTCCATATCCTGA 1983 0.4211 MRERVVREVRRSVRMDDKHTHIHTSPLAFALTVSCFFCIALPHSHSQPSPPPSSPPPPCAEPSYMCRINVSGNLDPVWKQIPPSQCISSDSSPQLSCSASYESQNFTVKKFNNSIHTMTVVPAHTVNDVCSPDFFHIYDNLKNSLLKHYESTRNVIVFFDGCPLDIPNFPSERKFKCGDAVYYFRGRDETYVHTSLEYCKKSLLVPIAAPLGDYDNKDGGAEVLKEALRDGFQISYSPPQRCRRCTEINGNCWSGGYGYNGDVVSCNYYCPNQYCSPKSKSNGNWDQKRKFIILGVTGSAIAAVLILFSILCVRYTSPTWQANFGLASKSNQNIEAFLRIHGPLALKRYKLSDVKKMTNNFRVKLGQGGFGAVYKGKLSNGSVVAVKMLSTSKKNGEEFVNEVASISRTSHVNVVSLLGFCLKGHKRALIYEFMSNGSLDKFIYRTRDETLSALSWDIMYQIARDIARGLEYLHKGCNTRIFHFDIKPHNILLDDNFCAKISDFGLAKLCPRNESIVSLSDARGTMGYVAPEMWSRNLGRVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWAYNKLELENDLRPDMEMTAEENEIVKRLAMVGLWCTQTFPNDRPTMSEVIDMLEGNMDSIQIPPKPLLSSPTRSVPEYSIS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0628 660 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vra1g0628 660 MobiDBLite consensus disorder prediction 642 660 - -
Vra1g0628 660 ProSiteProfiles Protein kinase domain profile. 359 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0628 660 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Vra1g0628 660 MobiDBLite consensus disorder prediction 641 660 - -
Vra1g0628 660 Gene3D Phosphorylase Kinase; domain 1 324 433 - -
Vra1g0628 660 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 282 660 - -
Vra1g0628 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Vra1g0628 660 SUPERFAMILY Protein kinase-like (PK-like) 341 633 IPR011009 -
Vra1g0628 660 CDD STKc_IRAK 365 634 - -
Vra1g0628 660 SMART serkin_6 359 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0628 660 Gene3D Transferase(Phosphotransferase) domain 1 434 641 - -
Vra1g0628 660 Pfam Protein tyrosine and serine/threonine kinase 362 632 IPR001245 GO:0004672|GO:0006468
Vra1g0628 660 PANTHER RUST RESISTANCE KINASE LR10-RELATED 282 660 IPR045874 GO:0004672
Vra1g0628 660 Pfam Wall-associated receptor kinase C-terminal 191 267 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0628 Vra-Chr1 7273611 7284007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0628 62 658 Receptor kinase-like Gene Family AT1G66910 37.838 5.11e-124 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra1g0628 PK_Tyr_Ser-Thr 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0628 - - gsj:114419144 683.715