Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0627 ATGGATGATAAACATACTCAAATCCACACCACTCCCCTTGCCTTCGCACTCACCGTCTCTTGCTTCCTCTGCATCGCTTTGCCACGTTCCCACTCTCAACCATCGCCGCCATCGTCACCGCTACTGCCTTGTGCTGAGCCGTTATACATGTGCAGAATAAACGTTTCCGACATCTTAGATCCTGTCTGGAAACAGATTCCTCCCTCTCAGTGTATTGGCGTCGACTCATCACCCCAGCTCAGCTGCTCTGCTTCTTATGGATCTCAAAATTTCACACTGAAGAAGGTCGACAACACCACTCACACCATGACGGTGGTGCCAGCACACACTGTCAACAATGTTTGTTCTCCTGATTTTTTTCACATTTACGACAACTTGATCAACAGTCTGTTACAACATTACGAGTCAATGCGAAACGTCATCGTATTCTTCGATGGTTGTCCTCTCGACATCCCAAATTTTCCTTCAGAACGCAAATTTAAATGCGGGAATGCTGTGTACTATTTTAGGGGGGAGCATGAGAAGTTCTACATACACCCATCGCTTGAGTATTGCAAGAAAAGTTTGTTGGTGCCCATTGCCGCTCCTCTCGGTGATTACGATCATAAAGATGGTGGAGCTGAAGTTCTGAAAGAAGCTTTGAGGGATGGGTTTGAGGTCTNCTATAGTCCTCCTCAACACTGTAGAGGATGCAACCAAATTAACGGAAATTGCTGGACCGGTGGTTACGAGGGACATGAAGTTTCATGCAACTACTATTGCCCAAATCAATACTGTTCTCCCAAAAGCAAAAGTAGTGGAAATTGGGACCAAAAGAGGAAATTCATTATTTTAGGTGTTACAGGTTCAGCAATTGCAGCGGTGTTGATATTATTTTCAATTCTGTGTGTAAGATACACGTCATCAACCTGGCAAGCAAATTTTGGCTTGGCTTCAAAAAGTAATCAAAATATCGAAGCATTCCTTAAAATTCATGGCCCTCTAGCTCTGAAAAGATATAAACTATCAGATGTTAAGAAAATGACCAACAACTTCAAAGTAAAGTTGGGACAAGGTGGTTTTGGTGCAGTGTACATGGGAAAGTTATCCAATGGTAAAGTTGTGGCTGTAAAGATGTTGAGTGCAACCAAAAAAAATGGTAAAGATTTTATGAATGAGGTTGCTAGCATAAGTAGAACTTCTCATGTTAACGTTGTCTCTCTTCTTGGCTTTTGTTTGAAAGGTCACAAGAGAGCTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGACAAATTCATTTATAGAACAAGAGATGAAACCCTTTCAACCTTGAGTTGGGATATTATATATCAAGTTGCAAGGGACATAGCTCGAGGCTTAGAATACTTGCATAAGGGATGCAACACTCGAATTTTTCACTTTGACATAAAACCACATAACATTCTTCTGGATGACAACTTCTGTGCNAAGATATCTGATTTTGGGTTGTCAAAACTGTGTCCTAGGAATGAAAGTATCGTTTCCTTGTCAGATGCTAGAGGAACAATGGGGTATGTAGCTCCAGAGATGTGGAGCAGAAATCTTGGAAGAGTTTCGCATAAGTCTGATGTTTATAGTTACGGAATGCTGCTGCTAGAGATGGTTGGAGGGAGGAAGAACATCAATGATGAAGCAAGTCATACAAGTGAGATATACTTCCCACACTGGGCATACAATAAGCTTGAGTTGGACAATGATTTGAGACCAGATATGGAGATGACAACAGAAGAAAATGAGATTGCAAAGAGGTTGGCGATGGTGGGTTTATGGTGTACTCAAACGTTTCCTAATGACAGACCTACAATGAGCAGAGTGATTGATATGTTGGAAGGCAGCATGGATTCCTTACAAATCCCTCCCAAACCCTTCCTTTCTTCTCCCACTAGATCACTGTCGGAATATTCCATCTCCTGA 1935 0.4186 MDDKHTQIHTTPLAFALTVSCFLCIALPRSHSQPSPPSSPLLPCAEPLYMCRINVSDILDPVWKQIPPSQCIGVDSSPQLSCSASYGSQNFTLKKVDNTTHTMTVVPAHTVNNVCSPDFFHIYDNLINSLLQHYESMRNVIVFFDGCPLDIPNFPSERKFKCGNAVYYFRGEHEKFYIHPSLEYCKKSLLVPIAAPLGDYDHKDGGAEVLKEALRDGFEVXYSPPQHCRGCNQINGNCWTGGYEGHEVSCNYYCPNQYCSPKSKSSGNWDQKRKFIILGVTGSAIAAVLILFSILCVRYTSSTWQANFGLASKSNQNIEAFLKIHGPLALKRYKLSDVKKMTNNFKVKLGQGGFGAVYMGKLSNGKVVAVKMLSATKKNGKDFMNEVASISRTSHVNVVSLLGFCLKGHKRALIYEFMSNGSLDKFIYRTRDETLSTLSWDIIYQVARDIARGLEYLHKGCNTRIFHFDIKPHNILLDDNFCAKISDFGLSKLCPRNESIVSLSDARGTMGYVAPEMWSRNLGRVSHKSDVYSYGMLLLEMVGGRKNINDEASHTSEIYFPHWAYNKLELDNDLRPDMEMTTEENEIAKRLAMVGLWCTQTFPNDRPTMSRVIDMLEGSMDSLQIPPKPFLSSPTRSLSEYSIS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0627 644 PANTHER RUST RESISTANCE KINASE LR10-RELATED 267 644 IPR045874 GO:0004672
Vra1g0627 644 SMART serkin_6 343 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0627 644 Pfam Wall-associated receptor kinase C-terminal 176 251 IPR032872 -
Vra1g0627 644 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 267 644 - -
Vra1g0627 644 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vra1g0627 644 SUPERFAMILY Protein kinase-like (PK-like) 326 617 IPR011009 -
Vra1g0627 644 Pfam Protein tyrosine and serine/threonine kinase 345 616 IPR001245 GO:0004672|GO:0006468
Vra1g0627 644 ProSiteProfiles Protein kinase domain profile. 343 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0627 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Vra1g0627 644 Gene3D Phosphorylase Kinase; domain 1 306 417 - -
Vra1g0627 644 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Vra1g0627 644 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0627 Vra-Chr1 7232490 7295785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0627 185 642 Receptor kinase-like Gene Family AT5G38260 43.319 9.03e-122 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra1g0627 PK_Tyr_Ser-Thr 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0627 - - gsj:114419144 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3161 7 51333544 51337024 Vra1g0627 1 7232490 7295785 PCT