Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0625 ATGAGAGAGAGGGAAGTGAAAAGAAGTGTGAGAATGGATGATAAGTATAGTCACATCCACACTTCTCCCCTTGCCTTTGCACTCACCGTCTCTTGCTTCTTCTGCATCGGTTTGCCACATTCCCACTCTGAAAAATTGCTGCTGCCACTGCCATCACCGCCGCCGCCGCCACCGCTTTGTGCTGAGCAGTCATACATGTGCAACATAAAGGTTTCCGGCATCTTGGATCCTGTCTGGAAACAGATTCCTCCCTCTCAGTGTATCGGCACCGACCCATCACCCCAGCTCAGCTGCTCTGTTCCTTATTATGAATCTCAAAATTTCACACTGAAGAAGGTCAACCACACCACTCACACCATGACGGTGGTGCCAACATACACTGTCAACGATTTGTGTTCTCATGATGTTTTTTACATTTACGACAACTTGAACAACAGTCTGTTACGACATTACGAGTCAGTATACAACGTCATCGTATTCTTCGGTGGTTGTCCTCATAGCATCCCAGGTTTCCCTTTAGAACGCAGTTTTAAATGCGGGGATGCTGCGTTCTATTTTGGGGAGGAGGATGAGATGTTGCACAAAGTACCCGCATCGCTTCTGGATTGCAAGAGAAGGTTGCTAATGCCCATTGCCGCTCCTCTCGATCATTATGATAATAAAGATGGTGGAGCTGAAGTTCTTATAGAAGCTCTGGCGGATGGGTTTGAGATCTCCTATAGTCCTCTTCAACATTGCACAGGATGCAACCAAAGTATCGGAAATTGCTGGAACGATGGTTATGATTATGATGGAGATGTAGTTTCATGCAACTACTATTGCCCAAATCATTACTGTTCTTCCAAAAGGAGTGGACGACTGAATTGGAGAACGAAAATCATTATAGGTAGTGCAAGTGGAGCAATGGGAATATTCATGATATGCCTCATAATAGGTTGTAGAAAACGTATGTCATCAACAAGAAAGGAAAAATTTCATATTACTAATGAGCAGGATATTGAAGTATTCTTAAAAGATCATGGAACTCTAGCACAAAAGAAATATACATTTTCAGAAGTCAAGAAAATGACCAACAATTTCACGGTTAAAGTGGGTGAAGGTGGATTTGGTGTTGTATACAAAGGAGAGTTACGCAATGGTTATCATGTGGCTGTAAAATTATTAAGGGCATCAAAAGGAAATGGCAAAGACTTTATCAATGAAGTTGCCAGTATCAGTAGAACTTCTCATGTTAATGTTGTCCAACTTCTTGGATTCTGTTTAGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTCATCAGTAATAAGGGACTAGAAAGAACTTCATCTTTGACTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCCAAAGGATTAGAGTACTTGCACAAGGGATGCAACACTCGTATTTTACANTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTCTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACTATTTCAGTTTCAGANGCNAGAGGAACNATAGGNTATGTAGCTCCTGAAGTGTGCAACAAACATTTTGGTGGAGTATCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTACTAGAAATAGTGGGAGTGAGGAATAATATTAATGAAGAAGCCACTGAAACAAGTGAATACTTCCCAGATTGGATATACAGAAAGCTGGAGCAAGACCAAGATCTGAGAAGTGATGATGTGATAGCGTCAAAAGAAAAAGAGACAGAAAGGAGAATGATTGCAGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGATAGACCTACTATGAGTAGAGTAATAGAAATGTTAGAAGGCAACATCAATTCCCATGAAATACCCCCAAAACCTGTTCTTTCTTATCCCTCCATTGGATTGGTGCAAGAATGGAGCACTAGTTCCTTTCAGTCTGAGTAG 1995 0.4095 MREREVKRSVRMDDKYSHIHTSPLAFALTVSCFFCIGLPHSHSEKLLLPLPSPPPPPPLCAEQSYMCNIKVSGILDPVWKQIPPSQCIGTDPSPQLSCSVPYYESQNFTLKKVNHTTHTMTVVPTYTVNDLCSHDVFYIYDNLNNSLLRHYESVYNVIVFFGGCPHSIPGFPLERSFKCGDAAFYFGEEDEMLHKVPASLLDCKRRLLMPIAAPLDHYDNKDGGAEVLIEALADGFEISYSPLQHCTGCNQSIGNCWNDGYDYDGDVVSCNYYCPNHYCSSKRSGRLNWRTKIIIGSASGAMGIFMICLIIGCRKRMSSTRKEKFHITNEQDIEVFLKDHGTLAQKKYTFSEVKKMTNNFTVKVGEGGFGVVYKGELRNGYHVAVKLLRASKGNGKDFINEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFISNKGLERTSSLTWDNLLQIAKGIAKGLEYLHKGCNTRILXFDIKPHNILLDDNFCPKISDFGLAKLCPGKESTISVSXARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVRNNINEEATETSEYFPDWIYRKLEQDQDLRSDDVIASKEKETERRMIAVSLWCIQTFPKDRPTMSRVIEMLEGNINSHEIPPKPVLSYPSIGLVQEWSTSSFQSE* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0625 664 Gene3D Transferase(Phosphotransferase) domain 1 433 640 - -
Vra1g0625 664 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 106 649 - -
Vra1g0625 664 Pfam Protein tyrosine and serine/threonine kinase 361 630 IPR001245 GO:0004672|GO:0006468
Vra1g0625 664 ProSiteProfiles Protein kinase domain profile. 358 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0625 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 106 649 IPR045874 GO:0004672
Vra1g0625 664 SMART serkin_6 358 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0625 664 Pfam Wall-associated receptor kinase C-terminal 197 271 IPR032872 -
Vra1g0625 664 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Vra1g0625 664 Gene3D Phosphorylase Kinase; domain 1 316 432 - -
Vra1g0625 664 SUPERFAMILY Protein kinase-like (PK-like) 344 631 IPR011009 -
Vra1g0625 664 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0625 Vra-Chr1 7196761 7209482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0625 231 660 Receptor kinase-like Gene Family AT1G66910 47.500 2.01e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra1g0625 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0625 - - var:108319528 892.108