Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0624 ATGAGAGAGAGGGTTCTGAGGGAACTGAGTAAAAGTGTGAGAATGGACGATAAACATAGTCACATCCACACCTCGCCCCTAGCCTTCGCATTCACCGTCTCTTGCTTCTTCTGCATCGCTTTGCCACGTTCCCACTCTCAACCATCGCCGTCGCCTTCGCCGTCGCCACCGCTTTGTGCTGAGCAGTTATACCGGTGCAACATAAGCGTCTCCGCCATCTTCGATCCTTCCTGGGAAAAGATTCCACCCTCTCAATGTAACGGCGCCGATCCATCATCCCTGCTCAGCTGCCATTCTCATTATGAATCTCAAAATTTCACAGTGAAGGATATCGACAACACCACTCACACCATGAAAGTGATGCTAAGACCCCCTCTCGACCTTGTCTGTTCTACTCCCTTTTTTGACGGCTACCTGAACCTCGATTACGATAACTTCAAAAACACTCTGATCCTGTATAAGGCGCCAGTGCATAAAATCATCATATACGAAGATTGTCCTACAATCCCAGATTTCCCTTCAAAACGCAGTTTTAAGTGCGGGGCTGTTCTGTATTATTTTGAGGACAAAGAGGAGAGGCTCCACAGATACCCACAGCTACAAAATTGCAAGAATCGTTGGGACGTGCCTGCTGCCGCTCCTCTGGATCGTTATGATGACACTGATGATGGAGCTGGAGTTCTGAAAGAAGCTATCAATAATGCGTTTGAGGTCAAGTATGGTATTCCTGATGGTTGCACAAGATGCAGTGAAAGTGACGAAAGTTGCTCTCCATATGGTTATGGTTATGATGAACATCTAGTTTCATGCAGCTATTGCCCAAATGAACAGTGTTCTCTCAAAAAAAGACGAGTGAATTGGAGAGCGAAAATCGTTATAGGTACTGCAAGTGGAGCAACGGGAATATTCATGATATGCCTCATAATAGGTTGTAGAAAACGTATGTCATCAACAAGAAAGGAAAAGTTTCATATTACTAATGAGCAAGATATTAAAGTATTCTTAAAAGATCATGGAACTCTAGCACAAAGGAAATATACATTTTCAGAAGTCAAGAAAATGACGAAGAACTTCACAGTGAAACTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGCTACACAATGGGTACCATGTGGCTGTAAAATTATTAAGGGCATCAAAAGGAAATGGCAAAGACTTTATCAATGAAGTTGCCAGTATCAGTAAAACTTCTCATGTTAATGTTGTCCAAATTCTTGGATTCTGTTTAGAAGGAAAGAAGAAAGCACTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTTATCGGTAATAAGGGACTAGAAAGCACTCCATTCTTGAGTTGGGATAATGTGTTGCAAATTGCAAAAGGGATAGCGAGAGGACTAGAGTACCTGCACAAGGGATGCAACACTCGTATTTTACACTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTCTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACTGTTTCAGTTTCAGATGCGAGAGGAACAATAGGATATGTAGCTCCTGAAGTGTGCAACAAACATTTTGGTGGAGTATCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTACTAGAAATAGTGGGAGTGAGGAATAATATTAATGANGAAGCCACTGAAACAAGTGAATACTTCCCAGATTGGATATACAGAAAGCTGGAGCAAGANCAAGATTTGAGAAGTGATGATGTGATAGNGACAAAAGAAAAAGAGACAGAAAGGAGAATGATTGCAGTTAGTTTGTGGTGCATTCAAACCCTTCCTAAGGATAGACCTACTATGAGTAGAGTAATAGAAATGTTAGAAGGTAACATGAATTCCCAAGAAATACCCCCAAAACCTGTTCTTTCTTATCCCTCAACTGGATTGGTGCAAGAATGGACCACTAGTTCCTTGCAGTCTGAGTAG 1989 0.4168 MRERVLRELSKSVRMDDKHSHIHTSPLAFAFTVSCFFCIALPRSHSQPSPSPSPSPPLCAEQLYRCNISVSAIFDPSWEKIPPSQCNGADPSSLLSCHSHYESQNFTVKDIDNTTHTMKVMLRPPLDLVCSTPFFDGYLNLDYDNFKNTLILYKAPVHKIIIYEDCPTIPDFPSKRSFKCGAVLYYFEDKEERLHRYPQLQNCKNRWDVPAAAPLDRYDDTDDGAGVLKEAINNAFEVKYGIPDGCTRCSESDESCSPYGYGYDEHLVSCSYCPNEQCSLKKRRVNWRAKIVIGTASGATGIFMICLIIGCRKRMSSTRKEKFHITNEQDIKVFLKDHGTLAQRKYTFSEVKKMTKNFTVKLGEGGFGVVYKGELHNGYHVAVKLLRASKGNGKDFINEVASISKTSHVNVVQILGFCLEGKKKALIYEFMPNGSLDKFIGNKGLESTPFLSWDNVLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESTVSVSDARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVRNNINXEATETSEYFPDWIYRKLEQXQDLRSDDVIXTKEKETERRMIAVSLWCIQTLPKDRPTMSRVIEMLEGNMNSQEIPPKPVLSYPSTGLVQEWTTSSLQSE* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0624 662 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vra1g0624 662 Gene3D Phosphorylase Kinase; domain 1 329 430 - -
Vra1g0624 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vra1g0624 662 SUPERFAMILY Protein kinase-like (PK-like) 341 629 IPR011009 -
Vra1g0624 662 ProSiteProfiles Protein kinase domain profile. 356 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0624 662 Gene3D Transferase(Phosphotransferase) domain 1 431 639 - -
Vra1g0624 662 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 103 651 - -
Vra1g0624 662 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Vra1g0624 662 PANTHER RUST RESISTANCE KINASE LR10-RELATED 103 651 IPR045874 GO:0004672
Vra1g0624 662 Pfam Protein tyrosine and serine/threonine kinase 359 628 IPR001245 GO:0004672|GO:0006468
Vra1g0624 662 SMART serkin_6 356 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0624 Vra-Chr1 7185309 7194002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0624 201 658 Receptor kinase-like Gene Family AT1G66910 45.532 1.89e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra1g0624 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0624 - - var:108319528 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3160 7 51330309 51333092 Vra1g0624 1 7185309 7194002 PCT
Vra1g0624 1 7185309 7194002 Vra7g3161 7 51333544 51337024 PCT