Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0621 ATGGATACTTACAGTGCTACAAGTGCAGCGATTGTTGTATTGTTCATATGTTTGGCCATTCTGTGTTTGAGATACAAGTCATCGTTGTGGCAAGAACATTTTGGGTTGACTACAAAAAGTAACCAAAATATTGAAGCATTCCTTAAAAATCATGCTGCTCTAACTATACAAAGGTATAGCTTATCAGAGGTCAAGAAAATGACAAGCAACTTCAAAGTTAAACTAGGACAAGGAGGTTTTGGTGCAGTGTTCCAAGGAAAGCTATCCAATGGTAGTCACGTAGCTATAAAGATGTTGAACGAAACAAAAAAGAATGGTGAAGATTTCATCAACGAGGTTGCAAGCATCAGTAGAACTTCTCACGTTAATATTGTCACTCTTCTTGGATTCTGTCTGGAAGGCCGCAAGAGGGCTCTCGTTTATGAATTTATGTCAAACGGTTCCCTTGACAAATTCATTTATAGAGAACCCGAAAACATTGCACTCTTGAGTTGGGATATTATATATCAAATCTCCATGGGTATAGCTCAGGGGCTAGAATACTTGCAAAGAGGATGCAAAACATGA 567 0.3827 MDTYSATSAAIVVLFICLAILCLRYKSSLWQEHFGLTTKSNQNIEAFLKNHAALTIQRYSLSEVKKMTSNFKVKLGQGGFGAVFQGKLSNGSHVAIKMLNETKKNGEDFINEVASISRTSHVNIVTLLGFCLEGRKRALVYEFMSNGSLDKFIYREPENIALLSWDIIYQISMGIAQGLEYLQRGCKT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0621 188 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 188 IPR045874 GO:0004672
Vra1g0621 188 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 188 - -
Vra1g0621 188 Pfam Protein tyrosine and serine/threonine kinase 71 184 IPR001245 GO:0004672|GO:0006468
Vra1g0621 188 ProSiteProfiles Protein kinase domain profile. 69 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0621 188 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Vra1g0621 188 Gene3D Transferase(Phosphotransferase) domain 1 46 188 - -
Vra1g0621 188 SMART tyrkin_6 69 188 IPR020635 GO:0004713|GO:0006468
Vra1g0621 188 SUPERFAMILY Protein kinase-like (PK-like) 51 184 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0621 Vra-Chr1 7172267 7173062 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0621 10 188 Receptor kinase-like Gene Family AT1G66910 46.111 3.95e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra1g0621 PK_Tyr_Ser-Thr 4.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0621 - - gsj:114419144 255.758