Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0619 ATGGAAGACGATCATGATCATATGCATATACATATTTACATGATGTGTTGGTTATTGTTAATCACTTTGCCACACTCTCACTGTGAAACAGGTGCCACTTTTGATTATTCAGTTTGCAAGAAGCATTCTTACAACTGTGGAAATTTGTCCAACATCTTCTATCCTTTCTGGGGACACAATCGATCTTCTGAATGTGGCAGTGGCGATCCTTTCAAACTCACTTGCAATCATGATCACAACACTACTTCAATTCAAATTGCCTCCGAAAACTTCACAGTGAAGGAGATCAACAACACTGCTCACACCATGAAACTGGTGCCGGCAGACACTGTTACGAATCTATGCTCTCCGCAATCTGAGAATGGAAATGAGAGCCACACCGGTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTTTACTATTGTCCCTGCATCAGAACTTTCTCTTATGGACACTTTATGTGTGGAGATGATATCACTTATTATGCACTGGATTATGATAGGCTTTTCGTTGATTATCCACAACTTCTAAGTTGCAAGCGAAGTTTACACACGTGGAGTGATGCTCAGTTGAATTTTTCTGGTGGAATTCTTGCTTTGGAGAAAGTTCTCAATGAAGGGTTTGTGGTGAACTATAATGTTTCTCGAGTTTGCGAAAGATGTTTGGGAAGTGAAGGGCGTTGCTGGAGAGATGATATTGAAAAACATGTAGTGAACTCTTGCTACTATTGCCAAAATGGTTCTCATGGCCTACACTGTTCTCCCAGTCCTCTCAAAACCACCACAAGCAGTGCAGCAATTGCAACTGTGTTGATATGTGTAGCAATTTTCTGTCTAAGATACAAGTCATCAATCATGCAAGGACATTTTGGGTTGACTTCAAAAAGTAACAGAAATATTGAAGCATTCCTTAAAAATCATGGAGCTCAAACTCTAAAAAGATACAAATTTTCAGAAGTGAAGAAAATGACCAACTCCTTCAAAGTAAAACTAGGTGAAGGTAGTTTTGGTGCAGTATACAAAGGAGAGATACTCAATGGTTGCCCTGTGGCCATAAAGAAACTGAGTGCATCCAAAGGAAATGGTGAAGACTTTATCAACGAAGTTGCCAGTATTAGTAGAACTTCTCATGTTAATGTTGTTCAGCTTCTTGGATTCTGTTTGGAGGGAAGCAATAAAGCTCTCATTTATGAATATATGTCTAATGGTTCTCTTGACAAGTTTATTTACAATAAGGGAGTCAAAGCCATTCCATCGTTGGGTTGGGATAATTTGTGCCAAATTGCCAAAGGGATAGCTCAAGGACTAGAATACTTGCACAAGGGATGCAACACTCGCATTTTACATTTTGACATAAAACCACACAACATACTTCTGGATGAAAATTTTTGTCCCAAGATATCAGATTTTGGACTGGCAAAGCTTTGCCCCATGAAAGAGAGCACTATTTTCATGTCAGATCAAAGAGGAACAATAGGGTATAAAGCTCCAGAAGTGTGGAACAGACATCTTGGTGGAGTTTCACACAAATCAGATGTTTACAGTTATGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGAAACATTAATGCAGAAGCCAATCACCGAAGTGAGATATACTTCCCACACTGGGCATACAACAGGCTAAAGCAGGGTAGAGAATTGAGAGCTGATTGGGTGATAACCACAGAAGAACAGGAAATAGCAAGGAGAATGACCATAGTGGGATTATGGTGTGTTCAAACGATTCCACATGATAGACCTACAATGAGTAGAGTAATAGATATGCTGGAAGCCAACATGAATTCCTTGGAAATGCCTCCAAAACCTGATCATTCTTCCCCAATCAGTTGA 1866 0.3976 MEDDHDHMHIHIYMMCWLLLITLPHSHCETGATFDYSVCKKHSYNCGNLSNIFYPFWGHNRSSECGSGDPFKLTCNHDHNTTSIQIASENFTVKEINNTAHTMKLVPADTVTNLCSPQSENGNESHTGLFQDSPSVQKITIFYYCPCIRTFSYGHFMCGDDITYYALDYDRLFVDYPQLLSCKRSLHTWSDAQLNFSGGILALEKVLNEGFVVNYNVSRVCERCLGSEGRCWRDDIEKHVVNSCYYCQNGSHGLHCSPSPLKTTTSSAAIATVLICVAIFCLRYKSSIMQGHFGLTSKSNRNIEAFLKNHGAQTLKRYKFSEVKKMTNSFKVKLGEGSFGAVYKGEILNGCPVAIKKLSASKGNGEDFINEVASISRTSHVNVVQLLGFCLEGSNKALIYEYMSNGSLDKFIYNKGVKAIPSLGWDNLCQIAKGIAQGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPMKESTIFMSDQRGTIGYKAPEVWNRHLGGVSHKSDVYSYGMMLLEMVGGRRNINAEANHRSEIYFPHWAYNRLKQGRELRADWVITTEEQEIARRMTIVGLWCVQTIPHDRPTMSRVIDMLEANMNSLEMPPKPDHSSPIS* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0619 621 Gene3D Phosphorylase Kinase; domain 1 302 402 - -
Vra1g0619 621 Gene3D Transferase(Phosphotransferase) domain 1 403 613 - -
Vra1g0619 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vra1g0619 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 615 IPR045874 GO:0004672
Vra1g0619 621 Pfam Wall-associated receptor kinase galacturonan-binding 39 106 IPR025287 GO:0030247
Vra1g0619 621 SUPERFAMILY Protein kinase-like (PK-like) 312 602 IPR011009 -
Vra1g0619 621 SMART serkin_6 328 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0619 621 Pfam Protein kinase domain 331 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0619 621 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Vra1g0619 621 ProSiteProfiles Protein kinase domain profile. 328 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0619 621 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 10 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0619 Vra-Chr1 7163790 7168073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0619 13 614 Receptor kinase-like Gene Family AT1G66910 38.906 3.92e-131 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra1g0619 Pkinase 6.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0619 - - pvu:PHAVU_004G155800g 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0619 1 7163790 7168073 Vra7g3160 7 51330309 51333092 PCT