Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0618 ATGGCTGCGAAAAGATTGTTCAATGATTCTGAACGAGACCCTGATGAGCCAGACGACAAACGGATAAGAAATAACACTACCACACCTTCTTTTGCTTCTGTAATAGGAGAAGTAGTCATGATAAAGAACTTTGAGAATCTTTTCACTGCAATGGAACCTGTGCTTAAAAGAGTGGTGGGTGAGGAAGTTGAACGAGTTATGAGACAGTGGTCACGCTCCTTTACCAGGTCTCCTTCGTTGAGACTCCAAGCAATGGAGCAGCCATCAAGCTTGCAATTATGCTTCAGCAAGAGGCTTTTCCTTCCAATTTTCACAGGTAGCAGGATTCTTGACGTTGATGAGAACCCCATCAACATAGTTCTGATGGACAGAAGCAACAACAACGAAATGGTCCCCACAAGTCTCCCACATGCCATCAAGCTCGAGATTCTGGTTATTGATGGAGATTTTTCTCCTTCTGAGGATTGGACGAGTGATGAATTTAACAGACACATAGTGAAGGAAAGACATGGGAAGCGACCTTTACTTGCAGGAGAATTGAACTTGATCATGCGAGATGGAGTTGCACCAACTGGGGAAATGGAATTCACAGATAACTCTAGTTGGATCCGCTGCAGGAAGTTCAGAGTTGCAGTGAGGGTAGCACCAGGGAGTAACCAAGGAGTTCGAATTCGTGAAGGAATGACTGAAGCATTTATGGTCAAGGATCACCGTGGAGAATTGTACAAAAAACACTACCCTCCAATGCTTGATGACGAAGTGTGGCGCCTGGAAAAGATAGGTAAAGATGGAGCTTTCAACAAAAAGTTGTCTTCGCAGGGCATAAAAACAGTTCAAGAATTTCTTAAACTAGCAGTCGTTGACACTCTCAAGCTAAGAAATATTTTGGGCGTGGGGATGTCAGACAAAATGTGGGAAGTGACAATCAAGCATGCAATGACTTGTGACATAGGGAGCAAGTTGTACATTTATCGTGGACCACAGTTTACTCTTTTTCTGGATCCAATATGCAGATTAATTAGAGCAGACATCAGTGGACAGACATTTTCCAACAGAGATCAAATCTCCCAATTGAATAAGACCTATGTAGACAAATTGGTGAGAGATGCATACGCGAGATGGCCTAGCTTGGAGGTGATAGATGCGGTTCTGAACGATAACATTGCTGTGTTAACCCAAGGTGATCAAACTGCTGTCTCAGTAGCCACATATGATCAGAATGAGTATTACAGTGGCCAATCTGCAAGCTATGTTGCAAATAACAACACGCAAATGGGAAGCAGCGAGTGGTCACTGTATCAAGCCTACAGCACATTGCCGTTTGCTAATGGTTTTCCTTCTAATTTCTCAGCAACACAAACAGATGGAGACATGACCGCTTCAGGTTCAAGCTCTGGATGTTGA 1404 0.4345 MAAKRLFNDSERDPDEPDDKRIRNNTTTPSFASVIGEVVMIKNFENLFTAMEPVLKRVVGEEVERVMRQWSRSFTRSPSLRLQAMEQPSSLQLCFSKRLFLPIFTGSRILDVDENPINIVLMDRSNNNEMVPTSLPHAIKLEILVIDGDFSPSEDWTSDEFNRHIVKERHGKRPLLAGELNLIMRDGVAPTGEMEFTDNSSWIRCRKFRVAVRVAPGSNQGVRIREGMTEAFMVKDHRGELYKKHYPPMLDDEVWRLEKIGKDGAFNKKLSSQGIKTVQEFLKLAVVDTLKLRNILGVGMSDKMWEVTIKHAMTCDIGSKLYIYRGPQFTLFLDPICRLIRADISGQTFSNRDQISQLNKTYVDKLVRDAYARWPSLEVIDAVLNDNIAVLTQGDQTAVSVATYDQNEYYSGQSASYVANNNTQMGSSEWSLYQAYSTLPFANGFPSNFSATQTDGDMTASGSSSGC* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0618 467 Pfam Calmodulin binding protein central domain 249 315 IPR046830 -
Vra1g0618 467 MobiDBLite consensus disorder prediction 1 25 - -
Vra1g0618 467 PANTHER OS02G0177800 PROTEIN 1 463 IPR012416 GO:0005516
Vra1g0618 467 Pfam Calmodulin binding protein-like N-terminal domain 91 237 IPR046831 -
Vra1g0618 467 MobiDBLite consensus disorder prediction 1 23 - -
Vra1g0618 467 Pfam Calmodulin binding protein C-terminal domain 320 379 IPR046829 -
Vra1g0618 467 PANTHER PROTEIN, PUTATIVE-RELATED 1 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0618 Vra-Chr1 7155336 7159433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0618 13 374 Calmodulin-binding Proteins AT5G57580 47.297 2.39e-108 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0618 - - gmx:100803213 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0618 1 7155336 7159433 Vra1g0618 1 7155336 7159433 ECH
Vra7g3159 7 51322954 51326906 Vra1g0618 1 7155336 7159433 PCT