Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0612 ATGTCCTTTTTCTCCAGGCTGTGCCCCTGTTTCTACAAGGGAGGCGCAACCTCCGGCGACGGCGGCGAGCACCACGACGATCACAGCGGGCCAGCGGACTCCTTGGACCTGATTTTCGACCTCCACACTCTCCAACTCGCTACCAACTTCTTCAGCAGCCTCAACCAGCTAGGTCATGGAGGCTTTGGCCCTGTCTTCAAGGGAATGATGCCAAATGGTCAAGAAGTGGCGGTTAAGAAGCTGTCAATGGAATCTAGGCAAGGAGTTAAAGAATTCACCAACGAAGTCAGGCTACTACTCAGAATTCAGCACAAGAACTTGGTTACATTACTTGGTTGTTGTGCAGAAGGGCCTGAAAAGATGCTTGTCTATGAGTATCTACCTAACAAAAGTCTTGATCACTTTCTGTTTGATAAGAGGAAGTCTTCATCTTTGGACTGGGCAAAACGATTCAGAATAGTTACTGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCACCAGAAAGAATTATACACAGGGACATTAAAGCTAGTAACATATTGTTGGATGACAATTTAATTCCGAAAATTTCAGACTTTGGTTTGGCAAGGCTGTTTCCTGGGGAGGACACTCACGTACAGACATTTAAGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCATTGCGAGGATATCTGTCAGTGAAGACGGATGTTTTCAGTTATGGAGTCCTGGTGTTGGAAATAATTAGTGGGAGAAAAAACCAAGATATGCGACTTGGACCAGAAAAAGCAGATCTCTTGAGCTATGCATGGTCGCTTTATCAAGGAGGGAGACTAATGGAATTGATTGATCCAACCCTCGGCAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTTGGTTTGTTGTGCTGCCAAGCAAGCATAATTGAAAGGCCTGACATGAATGCTGTTCATCTCATGCTCTCAAGTGATTCCTTCACTTTGCCAAGGCCAGGTAAACCTGGAATTCAAGGTCGTACAGGACGTTGGACCACAACTACATCTGCTTTGAGCAATACCAATGCTAGTAACACTACCAGGGTCTCAGGTGGTAGTGGTAGTTTTGTAGAGGATTATTCTAGAAATTCAATATCTACCTCTTCTTTTGATGAAGGCAGATGA 1161 0.4513 MSFFSRLCPCFYKGGATSGDGGEHHDDHSGPADSLDLIFDLHTLQLATNFFSSLNQLGHGGFGPVFKGMMPNGQEVAVKKLSMESRQGVKEFTNEVRLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKRKSSSLDWAKRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDDNLIPKISDFGLARLFPGEDTHVQTFKISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIISGRKNQDMRLGPEKADLLSYAWSLYQGGRLMELIDPTLGKYNGDEAAMCIQLGLLCCQASIIERPDMNAVHLMLSSDSFTLPRPGKPGIQGRTGRWTTTTSALSNTNASNTTRVSGGSGSFVEDYSRNSISTSSFDEGR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0612 386 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0612 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Vra1g0612 386 CDD STKc_IRAK 57 321 - -
Vra1g0612 386 SMART serkin_6 51 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0612 386 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 384 - -
Vra1g0612 386 Gene3D Phosphorylase Kinase; domain 1 23 126 - -
Vra1g0612 386 SUPERFAMILY Protein kinase-like (PK-like) 36 321 IPR011009 -
Vra1g0612 386 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 384 - -
Vra1g0612 386 Pfam Protein tyrosine and serine/threonine kinase 54 252 IPR001245 GO:0004672|GO:0006468
Vra1g0612 386 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0612 Vra-Chr1 7088678 7092256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0612 37 338 Receptor kinase-like Gene Family AT4G11490 51.645 3.70e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra1g0612 PK_Tyr_Ser-Thr 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0612 - - gmx:100790304 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0612 1 7088678 7092256 Vra1g0612 1 7088678 7092256 ECH