Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0610 ATGAGACTTGCCATGTCTACTTCTTCAAAGAGCATCATCTGTTACAGCGAAGAAGATACTGAACTTAGAAGAGGGCCATGGAGTATTGAAGAGGATGATCTTCTTGGCAATTACATTGCCAATCATGGAGAAGGGAGATGGAATTTGGTTGCTATACGTGCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTTAAACGAGGCAATTTAACCTCAGAGGAGCAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCACAACAGCTGCCAGGCAGAACAGACAATGAAATAAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCGAGATATATGAAATCTGAGACACAGAGAACAACAGGATTTGTAGAATTTTTCAAGGGTCTACAGATGACAAGATGTCTTCATAAAGCACAAGAATCATCTCCTTCAGCCATGTCACTCCAAGACCAAGAAATTCCTATGCCTTCTGATGGTGGTTCTCACTATTCATCATTTGGGATTGAGGCAACACCAGAAACACAACATTTGAATCAGCATGAGCAGAACTCAGACTCTGAGCACAACAATGGTTCAAGCATTTCCAATTCAGAATCAGTAAATATCCAATATATGACTCAGCCTTTAGGGTGCACTACAAATCAATTCCAGGCCTTAGACAACTATGATTTTGGCATCTGTTCATATGATAGCTACAACATAGATAACAGTGCCTATGACATGGATTCATTCAACCTGGCAGCCACAATGGATGCTCAGAATCTGACACTCCCAGTTATTGGTTGCCAAATATCAGAAACCAACTCGCTAAATATGGAATCTGAATGCAGCACAAGGAGCAATGATGAATTATGGCAATTTATGAACATATAA 924 0.3994 MRLAMSTSSKSIICYSEEDTELRRGPWSIEEDDLLGNYIANHGEGRWNLVAIRAGLRRTGKSCRLRWLNYLKPDVKRGNLTSEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYMKSETQRTTGFVEFFKGLQMTRCLHKAQESSPSAMSLQDQEIPMPSDGGSHYSSFGIEATPETQHLNQHEQNSDSEHNNGSSISNSESVNIQYMTQPLGCTTNQFQALDNYDFGICSYDSYNIDNSAYDMDSFNLAATMDAQNLTLPVIGCQISETNSLNMESECSTRSNDELWQFMNI* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0610 307 Gene3D - 79 138 - -
Vra1g0610 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Vra1g0610 307 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 5 304 - -
Vra1g0610 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Vra1g0610 307 SMART sant 76 124 IPR001005 -
Vra1g0610 307 SMART sant 23 73 IPR001005 -
Vra1g0610 307 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Vra1g0610 307 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Vra1g0610 307 CDD SANT 81 120 IPR001005 -
Vra1g0610 307 MobiDBLite consensus disorder prediction 193 213 - -
Vra1g0610 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 304 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra1g0610 307 CDD SANT 26 71 IPR001005 -
Vra1g0610 307 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Vra1g0610 307 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Vra1g0610 307 Gene3D - 24 76 - -
Vra1g0610 307 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0610 Vra-Chr1 7082637 7084261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0610 19 164 MYB Transcription Factor Family AT1G68320 65.068 4.82e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0610 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0610 K09422 - gmx:100778425 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0610 1 7082637 7084261 Vra7g3150 7 51265116 51267125 ECH
Vra1g0610 1 7082637 7084261 Vra1g0610 1 7082637 7084261 ECH