Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0609 ATGGCTGAATTCACAGAAAATTTGCAACTTCAAACCATTAGACCCTCTTCTTTTCCATTCTTAGACATTGATCCAAGCATGGAACTCATAAACCAATTCATTGGGATCAACCAACATGTCATAGACAACTCAAACTTGACTATGCACAACTTGATGCCGTTTTCCTGTGACACCTTCTTGGGCCCTCAAGAACCTGAGTTTCCGGGAAACTTGGACGAAAATTTCCCTGCCCTTGTTCATCATGTCAACCACAATGCACTTCCTGTTTCCCTCCCCATTTTCCAAGCAGAAAATGAGATCCATGAAGGTAAAAAGAGGAAATCGGTGGATCTTCCAGAGACCAGTTCGGCTAACTCAACTCCTGCAGTTTCTGAGACTGGAAGCAAGATAAAACAAAGTTCTGGAAAAGGAAAGAGAGCAAAAAGCAATGTGACAGAAGAAGAGAAAGCAAAGGAAGTGGTCCATGTGAGAGCCAGAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAACTAAGGTGCTTACAGAATATTGTTCCGGGATGTTACAAGACCATGGGTATGGCAGTAATGTTGGACGAAATCATAAACTATGTGCAGTCCCTGCAGCATCAAGTAGAGTTCCTTTCTCTGAAGCTTACTGCAGCAAGTACCTTTTATGACTTCAATTCCGAGACAGATGCTTTAGAAACAATGCAGAGAGCAAGAGCATCAGAGGCAAAAGAGTTAGGGAGGTATAAGAGAGAAGGGTATGGAGGAGTTTCTTGCTTTCAACCAAGTTGGCCACTTTGA 822 0.4258 MAEFTENLQLQTIRPSSFPFLDIDPSMELINQFIGINQHVIDNSNLTMHNLMPFSCDTFLGPQEPEFPGNLDENFPALVHHVNHNALPVSLPIFQAENEIHEGKKRKSVDLPETSSANSTPAVSETGSKIKQSSGKGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGRYKREGYGGVSCFQPSWPL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0609 273 PANTHER TRANSCRIPTION FACTOR BEE 1 2 272 - -
Vra1g0609 273 MobiDBLite consensus disorder prediction 112 139 - -
Vra1g0609 273 MobiDBLite consensus disorder prediction 140 168 - -
Vra1g0609 273 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Vra1g0609 273 SMART finulus 168 218 IPR011598 GO:0046983
Vra1g0609 273 CDD bHLH_AtBPE_like 152 237 - -
Vra1g0609 273 MobiDBLite consensus disorder prediction 104 168 - -
Vra1g0609 273 Coils Coil 239 259 - -
Vra1g0609 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Vra1g0609 273 Gene3D - 162 224 IPR036638 GO:0046983
Vra1g0609 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 272 IPR024097 GO:0006355
Vra1g0609 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0609 Vra-Chr1 7069013 7071114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0609 65 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 53.333 2.81e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra1g0609 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0609 - - gmx:100806942 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0609 1 7069013 7071114 Vra7g3147 7 51244645 51246332 ECH
Vra4g1214 4 19096208 19099616 Vra1g0609 1 7069013 7071114 ECH
Vra1g0609 1 7069013 7071114 Vra1g0609 1 7069013 7071114 ECH