Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0603 ATGGAGGAAAATCTGCCTCCTGGATTCAGGTTTCATCCTACAGACGAAGAACTCATCACATGTTATCTTACAAAGAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCAGTCGTTGATCTCAACAAATCTGAACCATGGGACCTACCAGGTAAGGCTTCAATGGGGGAAAAAGAGTGGTACTTCTTTAGCTTAAGAGACAGAAAATATCCAACTGGACTTCGGACAAACCGAGCCACTGAATCAGGTTACTGGAAAACAACAGGAAAAGACAAGGAAATATTTCGTACTGGTGTTTTGGTAGGAATGAAGAAAACCCTAGTGTTCTATAGAGGTAGAGCTCCAAAGGGAGAGAAAAGCAATTGGGTCATGCACGAATATAGACTCGAAAACAAGCATCACTTGAGACCTTCCAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAGAAGAGCTTACTGGTGAAGAAACCACAGCAAACGAACTCATCACAACCAGATTCTCCATGTGACACAGTCTCAGTGGTCAATGAATTTGGTGATGTTGAGCTTCCTAATCTAAATAGCATTGCAAATTCTTCAGGTGGACTCACTGAGAATATTTCAGGACAGACTTTTATGAATGCTGATATTAGTAACAGTGTTAACACAAGCATGAACTTGGCCATGAATTGGGCAGTTGCAAATGAGGTTCATCAGGTTATTCCCTCTCTTCCATCACTACCATGGCCTTCTGGGTTGCTAAGTCCAACCATTTCTTCTGTAAATTCTTTGCTTCTCAAGGCATTGCAACTTAGAAGTTATCAACAAAGAGAAGCAGCAGCAGAAGCAGCAGCAGCTACAGATCATTTTGCATCATTTATGGGTCAAGGAGTTTCCCAAGTTGGAACTGACCTAAGTTCAAATCTGACAGCATCTTCTTCAAAAGTTCAAGAATGTATGCCACAGCAGCAACAACAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 996 0.4177 MEENLPPGFRFHPTDEELITCYLTKKVSDSSFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRTGVLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLENKHHLRPSKDEWVVCRVFQKSLLVKKPQQTNSSQPDSPCDTVSVVNEFGDVELPNLNSIANSSGGLTENISGQTFMNADISNSVNTSMNLAMNWAVANEVHQVIPSLPSLPWPSGLLSPTISSVNSLLLKALQLRSYQQREAAAEAAAATDHFASFMGQGVSQVGTDLSSNLTASSSKVQECMPQQQQQQEQPFNLDSIW* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0603 331 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Vra1g0603 331 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Vra1g0603 331 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Vra1g0603 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 268 - -
Vra1g0603 331 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vra1g0603 331 PANTHER BNACNNG63190D PROTEIN 2 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0603 Vra-Chr1 7023127 7025122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0603 1 331 NAC Transcription Factor Family AT3G18400 56.725 5.94e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g0603 NAM 2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0603 - - pvu:PHAVU_004G156700g 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0603 1 7023127 7025122 Vra1g0603 1 7023127 7025122 ECH
Vra7g3143 7 51216603 51219087 Vra1g0603 1 7023127 7025122 PCT