Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0599 ATGCGCTTCAGCTGCAATGGTTGCCGCGTCCTCCGCCGCGGCTGCACGGCCGACTGCCCCATTCGAAGGTCCCTCCAATGGATAAGTTGCCCTCACTCTCAGTCCAACGCCACCCTCTTTCTCGCTAAGTTCTATGGCCGTCAAGGTCTCCTCAACCTCCTCATCAATGCTCCCTCCCATCTCCAACCAGCGGTATTCAAATCTTTGCTATACGAAGCTTGCGGTAGGATGGTGAACCCGATTTTCGGTTCGACCGGGTTACTCTCGACCGGAAATTGGCACCTCTGTGAAGCTGCTGCCAAAGCCGTTCTCTGTGGCGCCCCGATTCAACAGGCTCTTCTTGATGGAGTGGAGAGTCTCGATTTCAAGGCTTGCGATATTCGCCACGTGGCAAGGAGTCATAAATCGTACGGCCCTGGTGCACTCAAAGTAGTAAAGTCAGGGACCAGCAAGTTCAAGCGCCGCGCTGCGAAGCCAAAAGTGGAGTCAACCGTGGCTGAGTTGGGTGAAAGCGAGTTATTTGGACAGCGTTCTCTGAGTCAGGACTCGGCGTCTGGGTTGACTCGGACGAGTGAGAACAAAATCATTGGTGGGGAAGCCGATAGTAGCTGCAGCGAGAATGTCGTGGTGCCGGCTCGAGCCAATGGTGAAGAAATTGAGCTTCTGTTGACTTTGGGGTGGGGACCATTGAAAAATCAATAA 702 0.5399 MRFSCNGCRVLRRGCTADCPIRRSLQWISCPHSQSNATLFLAKFYGRQGLLNLLINAPSHLQPAVFKSLLYEACGRMVNPIFGSTGLLSTGNWHLCEAAAKAVLCGAPIQQALLDGVESLDFKACDIRHVARSHKSYGPGALKVVKSGTSKFKRRAAKPKVESTVAELGESELFGQRSLSQDSASGLTRTSENKIIGGEADSSCSENVVVPARANGEEIELLLTLGWGPLKNQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0599 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 179 - -
Vra1g0599 233 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Vra1g0599 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 179 - -
Vra1g0599 233 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0599 Vra-Chr1 6977741 6979098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0599 1 230 AS2 family AT3G02550 45.082 1.09e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra1g0599 LOB 5.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0599 - - vun:114181255 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0599 1 6977741 6979098 Vra1g0599 1 6977741 6979098 ECH