Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0597 ATGAAAGAAGCAAGTGCATTAGGAGCTAGAACTGCACGAGCATGCGAGAGCTGTCTAAAAGTAAGAGCACGGTGGTATTGTGCTGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCGGCAAACCAATTAGCACGCAGGCACGAAAGGGTGAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGTGACCTTTAAGCAGAACAATAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACACCGCGCCACAACAGCAAGCACGTATCGGTGCAGCTACAAGAACAACAGAAGAAAATACACGAAGAAGGAGAAGAAGAAGAAGTGTTTTTCAACAACACCATTAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAAGCACTGCACAATTATGAGAGTGAGGAGCAGCTATTGTGTCGCGTGCCCGTGTTTGATGCTGAGCTTTGTAGTGTATACAATGAAGTGAAGGAAGAGGTTTTAGCTGGTGAAGAAGTCTTTGACTTAGACAATTTTTCTTCCGAGCTTCTGCCATCAGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTACTTGGAAACGGAGCTGATGAGGATTCATCTGAGCACGTGAAAGGATCAGAACTGCTGCTTGATTGCAAAGAAGAAGATGAAGAAATGGATGCATGTGTTGATGCAGTTGGAGTCAAAGAAAAAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATTCTGATACACCTTGCCATTTGGATTCGATTATTCTTGACATGAACAGCGAGGCCTTTAATTGGAATGATATTGTTGAGTCAGAATCACTTGCTCAGGAACAGGAAGAGGAGGCAAGTACAGTGGGAACCGACAAGAAGGACATGTTTTTGAGGCTAAACTATGAAGATGTTATTAGTGCTTGGGCCAGTCAAGGTTCTCCATGGACAACAGGAACCCCACCAAACTTCAATTCTGATGATTGCTGGCCAGATTTCTTGGGTTCGAATGGAGGGGATGTTCAGTGCTGTTATGGGGAAATGAAAAGTTTAAGAGGGCATGCAGATGGTGGAAGAGAAGCAAGAGTGTCAAGATACCGAGAGAAGAGAAGAACTCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAATGCTGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGAACATCAGCTGCTTTGCCAGCATAG 1239 0.4415 MKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLARRHERVKLQTASSKVNYSVTFKQNNKVAWHSGFTRKARTPRHNSKHVSVQLQEQQKKIHEEGEEEEVFFNNTISLPLVPELGSEEALHNYESEEQLLCRVPVFDAELCSVYNEVKEEVLAGEEVFDLDNFSSELLPSDMDLAEFAADVESLLGNGADEDSSEHVKGSELLLDCKEEDEEMDACVDAVGVKEKMVKVKDEEELDSDTPCHLDSIILDMNSEAFNWNDIVESESLAQEQEEEASTVGTDKKDMFLRLNYEDVISAWASQGSPWTTGTPPNFNSDDCWPDFLGSNGGDVQCCYGEMKSLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSAALPA* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0597 412 Pfam CCT motif 363 405 IPR010402 GO:0005515
Vra1g0597 412 ProSiteProfiles CCT domain profile. 363 405 IPR010402 GO:0005515
Vra1g0597 412 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 408 - -
Vra1g0597 412 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Vra1g0597 412 CDD Bbox1_BBX-like 14 55 - -
Vra1g0597 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 408 - -
Vra1g0597 412 Pfam B-box zinc finger 12 57 IPR000315 GO:0008270
Vra1g0597 412 SMART bboxneu5 10 57 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0597 Vra-Chr1 6969713 6973207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0597 4 405 C2C2-CO-like Transcription Factor Family AT1G25440 44.573 1.54e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra1g0597 zf-B_box 2.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0597 - - gmx:100802113 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3139 7 51183118 51185292 Vra1g0597 1 6969713 6973207 PCT