Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0596 ATGGAATGTAAGAGAGGAAAAGAGAAGGTTCTAGCCAAAGAAAAAAACGTAAAAACGGCAAGGAAAATTAGAATTGTGTACACTGACCCTGATGCTACAGATTACTCAAGTGAAGAAGAAGAAGAAGAAGGAGAAGATGATGATAAGTTGTTGAGAAATGGCTATGAGTTAAGTGGTTGCTCCAAGCGGGTTGTGAAGGAAATCTTGCTTCCATGCATGCAAAACAAGTTACAAGAAGAGAATTCATCACAAGATGTAAACAGTGAAAAGATGAAAGGAAGTCCAATCGAATTTTCAAGTAGGAGGATGAGGAAACCATCAAGCATGTACAAAGGTGTTCAACGTAGGAAATGGGGGAAGTATGTGGCAGAAATCAGAGACCCTATTCAAGGGGTGAGAGTGTGGCTTGGTACATTTGATACTGAACAGGAGGCTGCTATGGCTTATGAGAGAAAGAAGAATGAGTTTGAAAGGTCGAGAAAAAGGGATGCAGTGGCTTTTGACAGTTCCAAAGAAGTGTTGTTTCATGCATCTCCATCGTCAGTTCTTGATGTCTGCACTACAAAAGCTTCACTAGATGTTAGTGACCTGAATGATTCAGTCAAAGAAAAGTTCAATGTGGAAAAGGTTGGTGAAGGAGGAGGCAATGATGTGGAAGCAGTTAACAGTGAAGATAATTCAACACAGCTTTTGCTGGAGGAGCCAGTTATGCCATCATTGTTTGGTTATGATGGTTTCTGTTTGGATGAAGCAGAGAAAAGGGGAATTCTGCTTGATGAAGAGTGTTATAATTTCTTGGACAATGACATCAAAGGTGGTTTTATGTGGAATGTGGAACATGGGGATACCACTGTTCTTCCTCCTGTGGACAGTGCTTTTGATGAGTTAGCTTGGATTGATGAAACTCTAGATTGGGAAAGCTCATAA 927 0.4045 MECKRGKEKVLAKEKNVKTARKIRIVYTDPDATDYSSEEEEEEGEDDDKLLRNGYELSGCSKRVVKEILLPCMQNKLQEENSSQDVNSEKMKGSPIEFSSRRMRKPSSMYKGVQRRKWGKYVAEIRDPIQGVRVWLGTFDTEQEAAMAYERKKNEFERSRKRDAVAFDSSKEVLFHASPSSVLDVCTTKASLDVSDLNDSVKEKFNVEKVGEGGGNDVEAVNSEDNSTQLLLEEPVMPSLFGYDGFCLDEAEKRGILLDEECYNFLDNDIKGGFMWNVEHGDTTVLPPVDSAFDELAWIDETLDWESS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0596 308 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 307 - -
Vra1g0596 308 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Vra1g0596 308 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Vra1g0596 308 SMART rav1_2 109 174 IPR001471 GO:0003700|GO:0006355
Vra1g0596 308 ProSiteProfiles AP2/ERF domain profile. 109 168 IPR001471 GO:0003700|GO:0006355
Vra1g0596 308 MobiDBLite consensus disorder prediction 33 47 - -
Vra1g0596 308 MobiDBLite consensus disorder prediction 28 50 - -
Vra1g0596 308 CDD AP2 108 151 IPR001471 GO:0003700|GO:0006355
Vra1g0596 308 PANTHER - 1 307 - -
Vra1g0596 308 SUPERFAMILY DNA-binding domain 108 156 IPR016177 GO:0003677
Vra1g0596 308 Pfam AP2 domain 110 157 IPR001471 GO:0003700|GO:0006355
Vra1g0596 308 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0596 Vra-Chr1 6955875 6957410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0596 4 157 AP2-EREBP Transcription Factor Family AT1G68550 41.290 5.42e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra1g0596 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0596 - - pvu:PHAVU_004G157600g 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0596 1 6955875 6957410 Vra1g0596 1 6955875 6957410 ECH