Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0580 ATGTTACTTGAAACATTAGCCGTTCCTGCAACACTCCTTGTGGTATTCATTTTGGTTCTATCCTTCGCCTTGTTCCTTCCAAACCACCTTAAAGATGATAGAAAACATCCACCGGGTCCGAAACCCTTGCCAATTATTGGTAACCTTCACATCCTAGGAAAACTCCCACATCGAACCCTTCAAGCTTTTGCCAAAAAACATGGTCCCATAATGTCCATCAAGTTAGGACAGATCCCAGCCATCGTGGTTTCCTCACCTGAAACTGCAGAACTATTCCTCAAGACACATGATATTGTCTTTGCCAGCAGACCCAAAACTCAAGCATCAGAATACCTATCTTATGGAAGCAAGGGCATGGTGTTTTCTGAGTATGGATCATATTATCGCCACGTGAGAAAGCTGTGCGCCTCACAGCTTCTAAGTGCATCAAAGGTTGAGATGTTTCGTCCTTTGAGGAGGGAGGAGTTACGAGTGTTTGTGAAATCGCTTGAAAAAGTAGCAGCTTCAGGTGATGTTGTGAATTTGAGTCAACAGATTGGGGAGCTTATGTCCAATATTGTCTGTAAAATGATACTTGGCCGTACCAAAGATGATAGATTCGACCTAAAAGGGCTTACTCATGATGTTCTGTATTTGACTGGAGTGTTTAATGTTGCAGATTATTTACCTTGGGCAGCCATCTATGATCTCCAGGGATTGAAAAGAAAACTTAAGAAAGTTAGTACGGCATTTGACCAAGTGTTCGAGCAAATTATCAAAGATCATGAACATCCTACGGATAGAGACAAGAAAAGTCTGCATTCTGAGGATTTTGTTGACATACTTGTATCACACATGCAACAAGCCATGGATCAGCAGGAACATGATCACTTCATTGACAGAACTAATGTGAAGGCTATCATATTGGATTTGATTGCAGGAGCGTTTGAAACATCAGGTGTGGCCCTTGAGTGGGCCATGTCAGAACTCTTAAGGCATCCAAAGGATATGAAGAAACTTCAAGAAGAGTTAACTGATGTAGTTGGAATGAACAGGTTTGTGGAAGAGTGTGACTTATCAAAGCTACCTTTTCTGAATATGGTAGTGAAAGAGACTCTGAGGCTATATCCTCCTGGACCCTTGCTAGTGCATCGTGAGTCCTCACAAGACATTTCTATTGATGGCTATCATATAAAGAAGAAGACAAGAATTTTGATCAATGCATGGGCCATAGGACGAGATCCTAAAGTGTGGTCGGAAAATGCTGATATGTTTTTTCCTGAGAGATTTGTCGACAGTAACATAGACATCAGAGGACATGACTTTCGGCTTTTACCGTTTGGTTCTGGTCGCAGAGGATGTCCTGGGATACAATTGGGTCTAACCACTTTTGGCTTTGCTTTGGCTCAGTTAGTGCATTGCTTCAACTGGGAGCTTCCAATTGGAATGTCTTCTGATGATTTGGATATGACTGAAACTTTTGGCCTTTCAATACCAAGAAGTAAGCCTTTACTGGCTATACCAACTTATCGCCTATCTAATAAGGGTACTGATACATAG 1539 0.4172 MLLETLAVPATLLVVFILVLSFALFLPNHLKDDRKHPPGPKPLPIIGNLHILGKLPHRTLQAFAKKHGPIMSIKLGQIPAIVVSSPETAELFLKTHDIVFASRPKTQASEYLSYGSKGMVFSEYGSYYRHVRKLCASQLLSASKVEMFRPLRREELRVFVKSLEKVAASGDVVNLSQQIGELMSNIVCKMILGRTKDDRFDLKGLTHDVLYLTGVFNVADYLPWAAIYDLQGLKRKLKKVSTAFDQVFEQIIKDHEHPTDRDKKSLHSEDFVDILVSHMQQAMDQQEHDHFIDRTNVKAIILDLIAGAFETSGVALEWAMSELLRHPKDMKKLQEELTDVVGMNRFVEECDLSKLPFLNMVVKETLRLYPPGPLLVHRESSQDISIDGYHIKKKTRILINAWAIGRDPKVWSENADMFFPERFVDSNIDIRGHDFRLLPFGSGRRGCPGIQLGLTTFGFALAQLVHCFNWELPIGMSSDDLDMTETFGLSIPRSKPLLAIPTYRLSNKGTDT* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0580 512 SUPERFAMILY Cytochrome P450 34 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PANTHER CYTOCHROME P450 FAMILY PROTEIN 11 507 - -
Vra1g0580 512 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 Pfam Cytochrome P450 37 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 Gene3D Cytochrome P450 28 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0580 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Vra1g0580 512 PANTHER CYTOCHROME P450 93A3-LIKE 11 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0580 Vra-Chr1 6825340 6827336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0580 37 500 Cytochrome P450 AT3G48310 40.215 5.27e-124 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0580 - - gmx:100782181 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0580 1 6825340 6827336 Vra1g0580 1 6825340 6827336 ECH
Vra7g3134 7 51136863 51139208 Vra1g0580 1 6825340 6827336 PCT