Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0566 ATGGATCTAGAAGACAAGTTCCTTGCTAAAGTTTCTGGTATTCAAAGTCTTTCATCTAGTGCTCAAAGTACTCCTGAAAAAAATGGTCATTCAGATGATGCTTCAAGAAATTCAGAACTTCTTCAAGAGTTCCTAAAACCTGGTCTTAAGAAGGAACTTCTACGAACTTGCTTTGATAAGGACAAAAAGAACATTTCTTCAAAAAGCAGGATGACTGAAACTAAGTCAACCAGTAAGATTATCAAGAAGCAGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACAATCAAACTCCTGGATCTGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTATCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTTGGAGTTGTTGATCATGGACAACTGATGCAATTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGAGTAGATGTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTAGACGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAAGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAAATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAATCTCTGCTCTCTTGCTATTGAGAAAGCTGATGAGTGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTCCCCGCTGCCTGCAAGGTTGTGTTTGAAGAGGTGACGGCTTCCTCAGTCAAAATAATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACGTTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGATTTTGTTATCCAACCTCCAACCTTGCACGGAATATACATTTCGGATTGTATCTTTTACTGATACGGGTGACCTGGGTCACTCTGAGACCAAGTGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCATCAGTGGCTGTGAATCAAAAAAAGAACCTTCAAGCTGAGTGCGATTCTTCTGGTTCCAAATTGGAGCCCAATCCCACATCAGCTGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTACTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAACTGCTGTGGGCAGAGTGAAACTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCTTCAGTTTCACGAGACCTCGATCTAAATGTGGTCTCAGTGCCTGATTTAAATGAAGAGCTGACACCTCCCTTTGAGTCTTCCAGGGATGAAGATAACGGTTGTACCTTGCAGCAGGCCGTTGAAGCTGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGTGGTTCACAAACATGGAACCATGGACAAACCGGAGAAGTTCCTGCTGTTGACTCACGTGGAGACGCAAGTAGGAAAAGGAAAGCTAACACAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGACTCTCCTTTACGCCCTTCTGATGGTCCATTCTCTTTAGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCAGGGCAGCTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACTGTGACATCAAATTAA 2157 0.4196 MDLEDKFLAKVSGIQSLSSSAQSTPEKNGHSDDASRNSELLQEFLKPGLKKELLRTCFDKDKKNISSKSRMTETKSTSKIIKKQDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGQSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQNLCSLAIEKADEWLATVPNVNPESREGSLPAACKVVFEEVTASSVKIILIEMSNASSGDVKGYKLWYYKSREESHTKDPVCVFPKSQRRILLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNQKKNLQAECDSSGSKLEPNPTSADSGFKVRDLGKILHLTWAQEQGSFEGFCCADKRNCCGQSETIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRKANTNEETHDCDSTLINDSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSN* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0566 718 Pfam Fibronectin type III domain 332 413 IPR003961 GO:0005515
Vra1g0566 718 ProSiteProfiles Fibronectin type-III domain profile. 329 426 IPR003961 GO:0005515
Vra1g0566 718 MobiDBLite consensus disorder prediction 566 623 - -
Vra1g0566 718 MobiDBLite consensus disorder prediction 13 28 - -
Vra1g0566 718 MobiDBLite consensus disorder prediction 13 40 - -
Vra1g0566 718 CDD FN3 332 421 IPR003961 GO:0005515
Vra1g0566 718 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Vra1g0566 718 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 714 IPR044514 GO:0010048|GO:0040029
Vra1g0566 718 MobiDBLite consensus disorder prediction 571 586 - -
Vra1g0566 718 MobiDBLite consensus disorder prediction 68 115 - -
Vra1g0566 718 MobiDBLite consensus disorder prediction 593 614 - -
Vra1g0566 718 SUPERFAMILY Fibronectin type III 331 412 IPR036116 GO:0005515
Vra1g0566 718 MobiDBLite consensus disorder prediction 68 86 - -
Vra1g0566 718 Gene3D Immunoglobulins 314 425 IPR013783 -
Vra1g0566 718 PANTHER VIN3-LIKE PROTEIN 1 55 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0566 Vra-Chr1 6637594 6646364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0566 124 709 PHD Gene Family AT3G24440 49.502 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0566 - - gmx:100780157 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0566 1 6637594 6646364 Vra1g0566 1 6637594 6646364 ECH
Vra7g3125 7 51050720 51059394 Vra1g0566 1 6637594 6646364 PCT