Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0562 ATGAGGAAGAAAACCTATTCTTTCCACTTCTCACTCTCACTCTCTCTTTCTCTCTTCCTTGTTGTGCTTTTGCAGTCGCTCTGTGACTCTGAAGGAATCTCTCACAATGGGCCTCTCACCGACGCGGAAGCGAGCTACATCAAGCAGCGCCAGCTTCTGTACTACAAGGATGAGTTCGGTGACAGAGGAGAAAAAGTAACCGTAGATCCCTCTTTCCGCTTCGAGAACGACCGTTTGAGAAACGCATACATAGCGTTACAGGCATGGAAGCAGGCCATTCTCTCTGATCCCAAAAACCTCACGCTCGACTGGGTGGGGCCCGATGTCTGCAACTACACCTACGTCTTCTGCGCTCAAGCACTTGACAACCCTAAGATCCGCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGCTATCTCCCCGAGGAGCTCGGCTTGCTCACTGACCTTGCGCTCCTCCACATCAACACCAACCGCTTCTGCGGCACCGTGCCGCACAAGTTCGACAAGCTCAAACTCCTCTTCGAGCTGGATCTCAGCAACAACCGATTCGCCGGGAAGTTCCCCGACGTGGTGCTGCGTCTGCCGCAGCTCAAGTTCTTAGATCTGAGGTTCAACGAATTCGAAGGCACGGTCCCCAAGGAGCTCTTTGACAAGGACCTCGACGCTATTTTCATCAATGACAACCGCTTCGTGTTCGACCTGCCGGATAACTTTGGCAACTCGCCGGTGTCCGTGATCGTGCTGGCCAACAACCGCTTCCACGGTTGCGTGCCGGCTGGAATCGGCAACATGAAGGGGTTGAACGAGATTATTCTGATGAACAACGCTTTTAGGTCGTGCTTCCCCGAGGAGATAGGGTTGCTGAAGAACTTGACGGTGTTCGATGTGAGCTTCAACCAGTTGTTAGGTCCTTTGCCTGATGCCATCGGAGGCGCCGTGAGTTTGGAGCAGCTCAATGTGGCTCATAATTTACTCTCTGGGAAGATTCCCGAGAGCATTTGCAAGCTTCCCAATCTCCAGAACTTTACTTTCTCTTACAACTTCTTCACCGGCGAGCCGCCGCGGTGTCTCGCTTTGCCGGCGGCTGACGACCGCCGCAACTGCCTACCGAACAGGCCGTACCAGCGCTCCGCAGGACAATGCAAGTCGTTTTTGTCACACCCTGTCGATTGCAAGTCTTTCAGGTGTAAGCCTTTTGTTCCTACCTTGCCTCCTCCTCCTCCTCCATCACCACCATTGCCGTCACCGCCACCGTCGCCTGTTTATGTTCCCCGTTCTCCTCCGCCCCCACCGCCGGTGTACTCGCCTCCACCACCAGTGTACTCGCCACCACCTCCACCAGTGTATTCGCCTCCCCCACCACCTCCATTGTATTCGCCTCCTCCACCACCTCCAGTGTATTCGCCTCCACCGCCGCCTCCACCTCCGCCACCTTCACCACCTCCGCCTTCACCGCCCCCTCCAGTCTATTCTCCACCTCCACCCCCACCTTCACCGCCACCACCATCACCACCTCCGCCATCCCCTCCACCACCAGTCTATTCGCCACCTCCTCCTCCCCCATCCCCGCCACCACCAGTCTATTCGCCACCTCCTCCGCCACCTTCGCCGCCGCCGCCTTCCCCGCCACCGCCCTCACCAGTTTATTGTGTAAGGTCTCCGCCACCACCTTCACCACCTCCGCCATCACCTCCACCTCCACCAAGTCCTGTATTCTCCCCACCACCACCCGTGCAATACTACTACAGTCCACCACCGCCACCACAACACTCGCCTCCCCCGCCCCCACCACACTCGCCACCGCCACCACATTCACCACCGCCACCACATTCCCCGCCGCCTCCGGTTTATCCCTATCTGTCACCGCCCCCACCTCCTCCTGTTCACTCTCCACCTCCACCGGTCCATTCACCACCACCACCGTCTCCTCCACCTTGTATAGAACCGCCACCACCACCTCCCCCCTGTATAGAACCGCCTCCGCCTCCACCATCACCACCACCTTGTGAAGAGCATTCGCCACCACCACCATCACCACATCCTGCACCTTACCTGCCACCGCCATCGCCATCACCACCACCTCCTCCAGTTCAATACAGTTCTCCTCCACCACCATCGTCGCCACCTGTTTATTATTACAACTCACCGCCGCCGCCACCTCCTTCGTCTCCACCACCAGCCCCTGTATATGAAGGGCCTTTGCCACCCGTCATAGGAGTCTCATATGCATCTCCTCCTCCACCTCCCTTTTATTGA 2268 0.5758 MRKKTYSFHFSLSLSLSLFLVVLLQSLCDSEGISHNGPLTDAEASYIKQRQLLYYKDEFGDRGEKVTVDPSFRFENDRLRNAYIALQAWKQAILSDPKNLTLDWVGPDVCNYTYVFCAQALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALLHINTNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPDVVLRLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCVPAGIGNMKGLNEIILMNNAFRSCFPEEIGLLKNLTVFDVSFNQLLGPLPDAIGGAVSLEQLNVAHNLLSGKIPESICKLPNLQNFTFSYNFFTGEPPRCLALPAADDRRNCLPNRPYQRSAGQCKSFLSHPVDCKSFRCKPFVPTLPPPPPPSPPLPSPPPSPVYVPRSPPPPPPVYSPPPPVYSPPPPPVYSPPPPPPLYSPPPPPPVYSPPPPPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPVYCVRSPPPPSPPPPSPPPPPSPVFSPPPPVQYYYSPPPPPQHSPPPPPPHSPPPPHSPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPPPCIEPPPPPPSPPPCEEHSPPPPSPHPAPYLPPPSPSPPPPPVQYSSPPPPSSPPVYYYNSPPPPPPSSPPPAPVYEGPLPPVIGVSYASPPPPPFY* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0562 755 MobiDBLite consensus disorder prediction 464 625 - -
Vra1g0562 755 MobiDBLite consensus disorder prediction 409 428 - -
Vra1g0562 755 PRINTS Proline rich extensin signature 408 424 - -
Vra1g0562 755 PRINTS Proline rich extensin signature 431 443 - -
Vra1g0562 755 PRINTS Proline rich extensin signature 448 469 - -
Vra1g0562 755 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 469 - -
Vra1g0562 755 SUPERFAMILY L domain-like 84 364 - -
Vra1g0562 755 MobiDBLite consensus disorder prediction 630 649 - -
Vra1g0562 755 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 469 - -
Vra1g0562 755 MobiDBLite consensus disorder prediction 661 755 - -
Vra1g0562 755 Gene3D Ribonuclease Inhibitor 82 370 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0562 Vra-Chr1 6595413 6598457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0562 33 441 Leucine-rich Repeat extension Gene Families AT3G24480 69.512 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0562 - - gmx:106799218 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0562 1 6595413 6598457 Vra1g0562 1 6595413 6598457 ECH